Analyzing Liberibacter isolates undetectable by standard diagnostic methods in Florida

Analyzing Liberibacter isolates undetectable by standard diagnostic methods in Florida

Report Date: 04/15/2014
Project: 563   Year: 2014
Category: CLas Bacteria
Author: Richard Lee
Sponsor: Citrus Research and Development Foundation

Citrus huanglongbing (HLB) is associated with three species of Candidatus Liberibacter: Ca. Liberibacter asiaticus (Las), Ca. L. americanus (Lam), and Ca. L. africanus (Laf). The majority of the testing in Florida is focused on detection of Las as this is the only bacterium known to be associated with HLB in Florida to date, while Lam and Las have both been found in Texas. In March 2013, twelve different isolates from citrus and citrus relatives identified as being naturally infected with Ca. Liberibacter species but which would test negative for Las, Lam, and Laf, were inoculated into receptor plants in a greenhouse at Ft. Pierce. From the twelve isolates which were inoculated into receptor plants in the greenhouse, nine isolates have been established. The isolates which were not recovered came from citrus relatives that are not highly graft compatible with citrus. The nine isolates which have been recovered and established have been grafted into plants for the cross protection trial. DNA extracts from these nine isolates are being sequenced using miSEQ and PacBio approaches.


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