Horticultural & Management


Calcium carbonate may reduce root health and exacerbate HLB expression

Report Date: 02/01/2016   Project: 731   Year: 2015

Calcium carbonate may reduce root health and exacerbate HLB expression

Report Date: 02/01/2016
Project: 731   Year: 2015
Category: Horticultural & Management
Author: James Graham
Sponsor: Citrus Research and Development Foundation

Leaf and soil nutrient analysis from a survey of 20-22 blocks in two flatwoods locations in Hendry and Collier County were compared for changes from the 2014 to 2015 season. The blocks were treated with 150 lb Tiger sulfur & 3.0 gal N-phuric acid/ton liquid fertilizer per acre (50% dry and 50% liquid) for three seasons following our recommendations for acidification since 2013. Acidification reduced soil pH by 0.6 units to 6.4 in the Hendry Co. location and by 0.3 units to 6.7 in the Collier Co. location. Soil Ca was increased in both locations; soil Mg as well as leaf Mg was unaffected by the pH drop. The increase in Ca availability and uptake was due to release of soil Ca as no fertilizer Ca was supplied. These results confirm the major benefit of soil acidification is to increase availability of Ca. Also following our recommendation increase in leaf Ca was achieved in flatwoods groves in Hardee Co. with low pH (<6.0) and soil Ca (< 500 lb/acre) by applying Ca sulfate (gypsum) at 1000 lb/acre as a soil amendment. Program on Management of soil and water bicarbonates, pH and nutrient availability was presented on December 2, 2015 as part of Indian River Citrus School at UF-Indian River Research and Education Center (IRREC) in Ft. Pierce. A recent analysis of groves management costs for acidification treatments reported a range from $50-75/acre (Singerman, A. and Muraro, R. 2015. Summary of 2014/15 Production Costs for Indian River Fresh Market Grapefruit and Southwest Florida Juice Oranges. UF-IFAS EDIS FE968, 10 pp)



Functional disruption of the NodT outer membrane protein of Candidatus Liberibacter asiaticus for rootstock-mediated resistance to citrus greening using a phloem-directed, single-chain antibody

Report Date: 01/30/2016   Project: 424

Functional disruption of the NodT outer membrane protein of Candidatus Liberibacter asiaticus for rootstock-mediated resistance to citrus greening using a phloem-directed, single-chain antibody

Report Date: 01/30/2016
Project: 424
Category: Horticultural & Management
Author: Timothy McNellis
Sponsor: Citrus Research and Development Foundation

During this reporting period (October, November, and December, 2015), the transgenic plants being produced for this project continued to grow at two different locations in secure greenhouses and growth chambers. Seven independently-transformed citrus plants carrying the FLT-antiNodT fusion protein expression construct are growing in Dr. McNellis’ lab at the Pennsylvania State University at University Park, PA, and an additional eight independently-transformed citrus plants carrying the FLT-antiNodT fusion protein expression construct are growing at Dr. Tim Gottwald’s lab at the United States Horticultural Laboratory in Fort Pierce, Florida. These plants are continuing to be propagated at both Ft. Pierce and Penn State. We now have propagated each line at Penn State with about 10 propagated trees rooted per transgenic line. In addition, we used genomic DNA analysis (Southern blotting) to confirm the presence of the anti-HLB gene in the genome of the grapefruit trees. Control plants that have been through the transformation process were also generated during the reporting period. These plants are the best comparison to the FLT-antiNodT plants in terms of plant behavior and disease resistance. These control plants will be sent to Penn State from Lake Alfred during the next reporting period. We call these the “transformation control” trees. Our collaboration with Dr. Janice Zale (University of Florida Mature Citrus Transformation Facility, Lake Alfred) to transform varieties important to the Florida citrus industry, including the ‘Valencia’ and ‘Hamlin’ sweet orange varieties and the ‘Citrumello’ and ‘Carrizo’ rootstocks with the FLT-antiNodT expression construct, continued during the reporting period. Hamlin and Carrizo transformants are now growing at Lake Alfred. Dr. Zale will maintain the original transformants, and will send propagated cuttings to Penn State soon. During the reporting period, Dr. McNellis applied for and was granted USDA permits to move sweet orange, rootstock, and “transformation control” trees to Penn State. This will set us up well for tests on these new trees.



Cell Penetrating Peptides for Citrus Genetic Improvement - 752

Report Date: 01/29/2016   Project: 572   Year: 2015

Cell Penetrating Peptides for Citrus Genetic Improvement - 752

Report Date: 01/29/2016
Project: 572   Year: 2015
Category: Horticultural & Management
Author: Gloria Moore
Sponsor: Citrus Research and Development Foundation

This quarter, using Cas9m4, with conjugated activation or repression domains, we intended to modify the expression of citrus proteins responsible for regulating flowering, namely TERMINAL FLOWER-1 (TFL), in order to reduce juvenility. TFL is a repressor of flowering and has been shown to inhibit flowering when overexpressed and to increase flowering when enhanced in Arabidopsis thaliana. We want to down-regulate TFL transiently, so we intend to decrease maturation times and do so without the use of transgenic insertion that is deemed unfavorable. For this quarter, we have gotten our early real-time PCR results. Using an activator construct pCAMBIA-2201-Cas9m4-VP16-EcR along with a sgRNA construct, pCAMBIA-1302-TFL-sgRNA-968 for one experiment, we have generated data from two different experiments. Statistical analysis awaits, but the early data suggest that instead of up-regulating TFL as predicted, we have slightly down-regulated the gene, suggesting that targeting the 5 UTR of the TFL gene does not allow the transient CRISPR machinery to work. Our follow up experiment is using a repressor, pCAMBIA-2201-Cas9m4-KRAB, to verify the extent to which we can down-regulate the gene and hopefully cause early flowering.



Application of a natural inducer of systemic acquired resistance and engineering non-host resistance in citrus for controlling citrus diseases

Report Date: 01/29/2016   Project: 754   Year: 2015

Application of a natural inducer of systemic acquired resistance and engineering non-host resistance in citrus for controlling citrus diseases

Report Date: 01/29/2016
Project: 754   Year: 2015
Category: Horticultural & Management
Author: Zhonglin Mou
Sponsor: Citrus Research and Development Foundation

The project has two objectives: (1) Increase citrus disease resistance by activating the natural SAR inducer-mediated defense-signaling pathway. (2) Engineer non-host resistance in citrus to control citrus canker and HLB. For objective 1, we performed concentration gradient experiments to determine the lowest concentration of the natural SAR inducer, which is sufficient for canker resistance. We used 0, 0.25, 0.5, 0.75, and 1 mM of the SAR inducer, as we have found that 1 mM of the SAR inducer was able to induce strong canker resistance. We used both infiltration and soil drench to treat citrus plants with the SAR inducer. For infiltration, treated leaves were inoculated 24 hours later and for soil drench, leaves on the treated plants were inoculated 7 days later. As in the previous experiments, 5 plants were used for each treatment; three leaves on each plant were inoculated; 6 inoculations on each leaf were carried out, and a total of 90 inoculations were used for each treatment. Results showed that, for both infiltration and soil drench, the strength of canker resistance is concentration dependent in the range between 0 to 1 mM. Therefore, 1 mM is likely the concentration that should be used for inducing canker resistance. We will confirm this result in the coming season. Moreover, we found that treatment of citrus plants with the SAR inducer produced systemic residual resistance to canker. We cut back previously treated plants and tested canker resistance on leaves on the new flushes. Canker disease symptom development was significantly attenuated on the leaves on previously treated plants. We will confirm this interesting observation in the coming season. Meanwhile, we are designing experiment to determine whether the systemic residual resistance is conferred by the SAR inducer residue or products induced by the inducer. For objective 2, among 49 independent transgenic lines expressing the Arabidopsis nonhost resistance genes, 20 lines showed increased resistance to citrus canker. We have propagated 10 lines that exhibited good canker resistance in the first test. The progeny plants are growing in the greenhouse and will be tested when they are ready.



High-Throughput Inoculation of Transgenic Citrus for HLB Resistance

Report Date: 01/15/2016   Project: 15-016   Year: 2015

High-Throughput Inoculation of Transgenic Citrus for HLB Resistance

Report Date: 01/15/2016
Project: 15-016   Year: 2015
Category: Horticultural & Management
Author: David Hall
Sponsor: Citrus Research and Development Foundation

This project (Hall-15-016) is an extension of a project that recently came to a close (Hall-502). The driving force for this project is the need to evaluate citrus transformed to express proteins that might mitigate HLB, which requires citrus be inoculated with CLas. USDA-ARS-USHRL, Fort Pierce Florida is producing thousands of scion or rootstock plants transformed to express peptides that might mitigate HLB. The more rapidly this germplasm can be evaluated, the sooner we will be able to identify transgenic strategies for controlling HLB. The purpose of this project is to support a high-throughput facility to evaluate transgenic citrus for HLB-resistance. This screening program supports citrus breeding and transformation efforts by Drs. Stover and Bowman. Briefly, individual plants to be inoculated are caged with infected psyllids for two weeks, and then housed for six months in a greenhouse with an open infestation of infected psyllids. Plants are then moved into a psyllid-free greenhouse and evaluated for growth, HLB-symptoms and Las titer, and finally the plants are transplanted to the field where evaluations of resistance continue. CRDF funds for the inoculation program cover the costs associated with establishing and maintaining colonies of infected psyllids; equipment such as insect cages; PCR supplies for assays on psyllid and plant samples from infected colonies; and two GS-7 USDA technicians. A career technician is assigned ~50% to the program. USDA provides for the program two small air-conditioned greenhouses, two walk-in chambers, and a large conventional greenhouse. Currently 18 individual colonies of infected psyllids are maintained. Some of the individual colonies are maintained on CLas-infected lemon plants while others are maintained on CLas-infected Citron plants. Update: Two technicians funded by the grant were hired during August and have been trained to establish and maintain colonies of infected psyllids, conduct qPCR assays on plant and psyllid samples, and run the inoculations. As of December 31, 2015, a total of 7,853 plants have passed through inoculation process. A total of 154,595 psyllids from colonies of CLas-infected ACP have been used in no-choice inoculations. Research concluded during September 2015 showed that seedling citrus with flush is significantly more prone to contracting the HLB pathogen than seedling citrus without flush: Hall, D. G., U. Albrecht, and K. D. Bowman. 2016. Transmission rates of Ca. Liberibacter asiaticus by Asian citrus psyllid are enhanced by the presence and developmental stage of citrus flush. J. Econ. Entomol. (in press)



Development of Technologies Important for Creation and Commercialization of Transgenic HLB Resistant Citrus

Report Date: 01/15/2016   Project: 749   Year: 2015

Development of Technologies Important for Creation and Commercialization of Transgenic HLB Resistant Citrus

Report Date: 01/15/2016
Project: 749   Year: 2015
Category: Horticultural & Management
Author: Yi Li
Sponsor: Citrus Research and Development Foundation

The main accomplishments during this quarter: We have confirmed the K gene overexpression-mediated improvement on transformation efficiency of a lemon cultivar we used. We have tested the effects of the K gene on genetic transformation efficiencies of 6 citrus cultivars and we observed 3-15 fold increases if compared to our control vector, and 3-11 fold increases if compared to the highest transformation efficiencies of the same cultivars previously reported by others. We have observed and confirmed the stimulatory effects of one non-conventional regulator of gene expression on shoot regeneration efficiencies of some citrus cultivars. We have been testing the effects of that factor and other factors in combinations of the K gene on transformation efficiencies of both mature and juvenile citrus explants and our preliminary results suggest that there are significant improvements in transformation efficiency for both juvenile and mature tissues. We are also repeating the effects of endogenous auxin and the auxin transport on efficiencies of shoot regeneration and Agrobacterium-mediated infection of mature tissues of citrus. One manuscript reporting the drastically improvement of six citrus cultivars including a lemon cultivar has been accepted for publication in “Plant Cell, Tissue and Organ Culture”. The article is currently in the production stage and should be out in either February or March issue.



Engineering Citrus for Canker Resistance

Report Date: 01/15/2016   Project: 15-022   Year: 2015

Engineering Citrus for Canker Resistance

Report Date: 01/15/2016
Project: 15-022   Year: 2015
Category: Horticultural & Management
Author: Lynne Reuber
Sponsor: Citrus Research and Development Foundation

Objective 1: Assess canker resistance conferred by the PAMP receptors EFR and XA21 Three constructs were used for genetic transformation of Duncan grapefruit and sweet orange as part of a previous grant: EFR, EFR coexpressed with XA21, and EFR coexpressed with an XA21:EFR chimera. Putative transgenics are currently being verified by PCR in the Jones lab, and five PCR positive plants have been identified so far. To ensure that there will be sufficient events to analyze to come to a conclusion about the effectiveness of these genes, we will initiate more transformations in Duncan grapefruit at the Core Citrus Transformation Facility at UF Lake Alfred. EFR, XA21, and XA21 + EFR constructs have been re-created with the inclusion of a GFP marker for identification of transformants. Objective 2: Introduction of the pepper Bs2 disease resistance gene into citrus Constructs are being created in the Staskawicz lab to express Bs2 under the 35S promoter and under a resistance gene promoter from tomato. Constructs are also being created in which Bs2 is co-expressed with other R genes that may serve as accessory factors for Bs2. Constructs with tagged Bs2 have been confirmed to function in transient assays, and have been transformed into Arabidopsis. Protein expression will be confirmed by immunoblot. GFP is currently being added to the constructs to facilitate selection of transformants in citrus. Objective 3: Development of genome editing technologies (Cas9/CRISPR) for citrus improvement The initial target for gene editing is the citrus homolog of Bs5 of pepper. The recessive bs5 resistance allele contains a deletion of two conserved leucines. The citrus Bs5 homolog was sequenced from both Carrizo citrange and Duncan grapefruit, and conserved CRISPR targets were identified. Four CRISPR constructs are being created in the Staskawicz lab: C1) A construct targeting two sites that will produce a 100 bp deletion in Bs5 in both Carrizo and Duncan (the bs5 transgene will be added); C2) A construct targeting a site overlapping the two conserved leucines; C3) C2 with the addition of a bs5 repair template for Carrizo that will not be cut; and C4) C2 with a similar repair template for Duncan grapefruit. C1 and C2 have been tested by co-delivery into Nicotiana benthamiana leaves with another construct carrying the targeted DNA from Carrizo or Duncan varieties. “C1” clearly cut the target sites of both varieties, causing 100-bp deletions. Sequence analysis confirms that “C2” cuts the target site in Carrizo. Considering this site is identical in both Duncan alleles, we expect it to cut Duncan as well. And, considering “C3” and “C4” are built from “C2,” we expect them to target the cut site as well. Sequence analysis is underway to confirm these expectations. In addition, to aid in the selection of positive transgenics, we are currently adding a GFP reporter into each CRISPR construct.



A secure site for testing transgenic and conventional citrus for HLB and psyllid resistance

Report Date: 01/14/2016   Project: 607   Year: 2015

A secure site for testing transgenic and conventional citrus for HLB and psyllid resistance

Report Date: 01/14/2016
Project: 607   Year: 2015
Category: Horticultural & Management
Author: Ed Stover
Sponsor: Citrus Research and Development Foundation

A test site at the USDA/ARS USHRL Picos Farm in Ft. Pierce supports HLB/ACP/Citrus Canker resistance screening for the citrus research community. There are numerous experiments in place at this site where HLB, ACP, and citrus canker are widespread. The first trees have been in place for six years. A number of successes have already been documented at the Picos Test Site funded through the CRDF. The UF Grosser transgenic effort has identified promising material, eliminated failures, continues to replant with new advanced material, with ~200 new trees in April 2015 (Grosser, personal comm.). The ARS Stover transgenic program has trees from many constructs at the test site and is seeing some modest differences so far, but new material has been planted that has shown great promise in the greenhouse and the permit has been updated to plant many new transgenics. A trial of more than 85 seedling populations from accessions of Citrus and citrus relatives (provided as seeds from the US National Clonal Germplasm Repository in Riverside, CA) has been underway for 6 years in the Picos Test Site. P. trifoliata, Microcitrus, and Eremocitrus are among the few genotypes in the citrus gene pool that continue to show substantial resistance to HLB (Lee et al., in preparation, with the last samples collected this week), and P. trifoliata also displayed reduced colonization by ACP (Westbrook et al., 2011). Marked tolerance to HLB is apparent in many accessions with citron in their pedigree. All replicates of one alleged “standard sour orange” looks remarkably healthy and may permit comparison of more susceptible and tolerant near-isogenic variants. A new UF-Gmitter led association mapping study has just been initiated using the same planting, to identify genes associated with HLB- and ACP-resistance. A broader cross-section of Poncirus-derived genotypes are on the site in a project led by UC Riverside/USDA-ARS Riverside, in which half of the trees of each seed source were graft-inoculated prior to planting. A collaboration between UF, UCRiverside and ARS is well-underway with more than 1000 Poncirus-hybrid trees (including 100 citranges replicated) being evaluated to map genes for HLB/ACP resistance. Marked differences in initial HLB symptoms and Las titer were presented at the 2015 International HLB conference (Gmitter et al., unpublished). In July 2015 David Hall led assessment of ACP colonization across the entire planting, and the Gmitter lab will map markers associated with reduced colonization. Several USDA citrus hybrids/genotypes with Poncirus in the pedigree have fruit that approach commercial quality, were planted within the citrange site. Several of these USDA hybrids have grown well, with dense canopies and good fruit set but copious mottle, while sweet oranges are stunted with very low vigor (Stover et al., unpublished). A Fairchild x Fortune mapping population was just planted at the Picos Test Site in an effort led by Mike Roose to identify genes associated with tolerance. This replicated planting includes a number of related hybrids (among them our easy peeling remarkably HLB-tolerant 5-51-2) and released related cultivars. Valencia on UF Grosser tetrazyg rootstocks have been at the Picos Test Site for several years, having been Las-inoculated before planting, and several continue to show excellent growth compared to standard controls (Grosser, personal comm.).



Effect of windbreaks, copper bactericides and citrus leaf miner control on temporal and spatial progress of citrus canker

Report Date: 01/14/2016   Project: 15-050C   Year: 2015

Effect of windbreaks, copper bactericides and citrus leaf miner control on temporal and spatial progress of citrus canker

Report Date: 01/14/2016
Project: 15-050C   Year: 2015
Category: Horticultural & Management
Author: Franklin Behlau
Sponsor: Citrus Research and Development Foundation

Background information The objective of this project is to quantify the relative effect of copper (Cu), windbreak (Wb) and leafminer control (Lc) on the spatial and temporal progress of Asiatic citrus canker (ACC) under conducive conditions for epidemics and disease loss. The experiment is set up in a 10 ha plot planted with Valencia sweet orange grafted on Rangpur lime located in the municipality of Xambre, Paran , Brazil. The different treatments are the combination of up to three control measures (Cu, Wb, Lc) or none. The presence or absence of windbreak represents a plot. The presence or absence of copper sprays and leafminer control represents a subplot. Each subplot is composed of 112 trees. Each of the eight treatments has three replicates. Cu treated plots are being sprayed with Kocide (35% metallic copper) at 1 kg metallic copper/ha every 21 days. Lc is being performed with application of abamectin at 150 ml/ha every 21 days. Casuarina is used as a natural Wb around the plots. Disease evaluations started in December 2013 and include percentage of ACC symptomatic trees, proportion of the canopy affected by the disease, incidence of symptomatic fruits at harvest, and yield. CRDF funding will cover the period of November 2015 to October 2016. Pre-funding progress results Nineteen months since the onset of the epidemics (July 2015), the incidences of diseased trees in the plots with complete management (Cu, Wb, Lc) and no management reached 45.2 and 97.6%, respectively. ACC diseased trees under complete management showed a minimal citrus canker severity of 0.8% as opposed to 31.4% observed on trees without any control. At first harvest, the incidences of symptomatic fruits from trees treated with the tree measures and none were 3.8 and 58.5%, respectively. Finally, production of trees in the first harvest revealed the same trend observed for other assessments. Fruit yield of trees under complete management (40 kg/tree) was 186% higher than control trees (14 kg/tree). The combination of Cu and Wb is showing the greatest importance for disease control. Post-funding progress results Trees continued to be assessed monthly as previously described. By the end of this report, disease assessments of December 2015 had been performed but not processed. The assessments of January 2016 had not been concluded. Thus, up to November 2015, disease has not progressed since July 2015 as conducive conditions for the pathogen in the trial started in December. In November 2015, the incidences of diseased trees in the plots with complete management and no management reached 43.8 and 97.9%, respectively. Severity of citrus canker in the canopy dropped for all treatments and reached 0.6 and 2.5%. The same trend was observed in the previous year and it was mainly due to drop of ACC-affected leaves, production of spring flushes and lack of favorable weather conditions for disease outbreaks, which are expected to occur in the upcoming months.



A secure site for testing transgenic and conventional citrus for HLB and psyllid resistance

Report Date: 01/14/2016   Project: 220   Year: 2015

A secure site for testing transgenic and conventional citrus for HLB and psyllid resistance

Report Date: 01/14/2016
Project: 220   Year: 2015
Category: Horticultural & Management
Author: Ed Stover
Sponsor: Citrus Research and Development Foundation

A test site at the USDA/ARS USHRL Picos Farm in Ft. Pierce supports HLB/ACP/Citrus Canker resistance screening for the citrus research community. There are numerous experiments in place at this site where HLB, ACP, and citrus canker are widespread. The first trees have been in place for six years. A number of successes have already been documented at the Picos Test Site funded through the CRDF. The UF Grosser transgenic effort has identified promising material, eliminated failures, continues to replant with new advanced material, with ~200 new trees in April 2015 (Grosser, personal comm.). The ARS Stover transgenic program has trees from many constructs at the test site and is seeing some modest differences so far, but new material has been planted that has shown great promise in the greenhouse and the permit has been updated to plant many new transgenics. A trial of more than 85 seedling populations from accessions of Citrus and citrus relatives (provided as seeds from the US National Clonal Germplasm Repository in Riverside, CA) has been underway for 6 years in the Picos Test Site. P. trifoliata, Microcitrus, and Eremocitrus are among the few genotypes in the citrus gene pool that continue to show substantial resistance to HLB (Lee et al., in preparation, with the last samples collected this week), and P. trifoliata also displayed reduced colonization by ACP (Westbrook et al., 2011). Marked tolerance to HLB is apparent in many accessions with citron in their pedigree. All replicates of one alleged “standard sour orange” looks remarkably healthy and may permit comparison of more susceptible and tolerant near-isogenic variants. A new UF-Gmitter led association mapping study has just been initiated using the same planting, to identify genes associated with HLB- and ACP-resistance. A broader cross-section of Poncirus-derived genotypes are on the site in a project led by UC Riverside/USDA-ARS Riverside, in which half of the trees of each seed source were graft-inoculated prior to planting. A collaboration between UF, UCRiverside and ARS is well-underway with more than 1000 Poncirus-hybrid trees (including 100 citranges replicated) being evaluated to map genes for HLB/ACP resistance. Marked differences in initial HLB symptoms and Las titer were presented at the 2015 International HLB conference (Gmitter et al., unpublished). In July 2015 David Hall led assessment of ACP colonization across the entire planting, and the Gmitter lab will map markers associated with reduced colonization. Several USDA citrus hybrids/genotypes with Poncirus in the pedigree have fruit that approach commercial quality, were planted within the citrange site. Several of these USDA hybrids have grown well, with dense canopies and good fruit set but copious mottle, while sweet oranges are stunted with very low vigor (Stover et al., unpublished). A Fairchild x Fortune mapping population was just planted at the Picos Test Site in an effort led by Mike Roose to identify genes associated with tolerance. This replicated planting includes a number of related hybrids (among them our easy peeling remarkably HLB-tolerant 5-51-2) and released related cultivars. Valencia on UF Grosser tetrazyg rootstocks have been at the Picos Test Site for several years, having been Las-inoculated before planting, and several continue to show excellent growth compared to standard controls (Grosser, personal comm.).



Diaprepes control using a plant based insecticidal transgene approach

Report Date: 01/13/2016   Project: 925   Year: 2015

Diaprepes control using a plant based insecticidal transgene approach

Report Date: 01/13/2016
Project: 925   Year: 2015
Category: Horticultural & Management
Author: Manjul Dutt
Sponsor: Citrus Research and Development Foundation

Our project aims to provide durable long term resistance to Diaprepes using a plant based insecticidal transgene approach. In this quarter, all transgenic lines as described in the project proposal have been regenerated and most plants have been acclimatized and transferred into the greenhouse for further growth. A few putative transgenic lines have been transferred to fresh in vitro rooting medium in efforts to stimulate root production. Root samples from 21 lines have been analyzed for gene expression using qPCR. Of them, 12 were determined to be high expressers while the rest were medium to low in expression. We are in the process of evaluating the remaining greenhouse acclimated lines for gene expression. The high expresser lines will be propagated for subsequent evaluation with Diaprepes neonates.



Engineering Citrus for Canker Resistance

Report Date: 01/11/2016   Project: 15-022   Year: 2016

Engineering Citrus for Canker Resistance

Report Date: 01/11/2016
Project: 15-022   Year: 2016
Category: Horticultural & Management
Author: Lynne Reuber
Sponsor: Citrus Research and Development Foundation

Objective 1: Assess canker resistance conferred by the PAMP receptors EFR and XA21 Three constructs were used for genetic transformation of Duncan grapefruit and sweet orange as part of a previous grant: EFR, EFR coexpressed with XA21, and EFR coexpressed with an XA21:EFR chimera. Seven transgenics have survived and passed a PCR screen, and these have been grafted onto rootstocks. Grafted plants are currently growing, and will be tested for responsiveness to the elf18 ligand for EFR and for canker resistance. To ensure that there will be sufficient events to analyze to come to a conclusion about the effectiveness of these genes, we have initiated more transformations in Duncan grapefruit at the Core Citrus Transformation Facility at UF Lake Alfred. In addition, we have added the recently-identified Cold Shock Protein Receptor (CSPR) to the transformation queue. Selection is underway, but the GFP marker is not expressed in citrus, and the protocol is being optimized. Objective 2: Introduction of the pepper Bs2 disease resistance gene into citrus Two constructs were created to co-express Bs2 with other R genes that may serve as accessory factors for Bs2. These constructs were provided to the Lake Alfred transformation facility, but the transformation attempts have so far been unsuccessful, possibly due to negative effects of the constructs in Agrobacterium or in citrus. Troubleshooting of these transformations with a negative control construct is underway. Objective 3: Development of genome editing technologies (Cas9/CRISPR) for citrus improvement The initial target for gene editing is the citrus homolog of Bs5 of pepper. The recessive bs5 resistance allele contains a deletion of two conserved leucines. The citrus Bs5 homologs were sequenced from both Carrizo citrange and Duncan grapefruit, and conserved CRISPR targets were identified. For proof of concept, we are targeting mutating the native citrus Bs5 alleles while simultaneously replacing the gene with the effective resistance allele. Two editing constructs have been created, one targeting a site overlapping the two conserved leucines, and one targeting two flanking sites to create a deletion in Bs5. Both constructs have been verified to function by co-delivery into Nicotiana benthamiana leaves with another construct carrying the targeted DNA from Carrizo or Duncan varieties. These constructs have been prioritized for transformation into Carrizo citrange, and transformations are underway at UC Davis. Transformants with mutations in Bs5 that contain the replacement bs5 allele will be selected and tested for canker resistance.



Create citrus varieties resistant or tolerant to Huanglongbing through transgenic and nontransgenic approaches

Report Date: 01/11/2016   Project: 15-020   Year: 2015

Create citrus varieties resistant or tolerant to Huanglongbing through transgenic and nontransgenic approaches

Report Date: 01/11/2016
Project: 15-020   Year: 2015
Category: Horticultural & Management
Author: Zhonglin Mou
Sponsor: Citrus Research and Development Foundation

The project has three objectives: (1) Confirm HLB resistance/tolerance in transgenic citrus lines. (2) Determine the chimerism of the HLB-resistant/tolerant transgenic lines. (3) Confirm HLB resistance in citrus putative mutants (nontransgenic lines). For objective 1, we are propagating a number of citrus transgenic lines overexpressing Arabidopsis defense genes. Our previous results indicated that these transgenic lines are likely resistant or highly tolerant to HLB. The progeny plants are growing in the greenhouse. For objective 2, we performed on round of real-time quantitative PCR (qPCR) to determine the chimerism of the HLB-resitant/tolerant transgenic lines. The results showed some of the lines may be chimeric. We are repeating the qPCR experiment. For objective 3, we are propagating the previously generated gamma ray-mutagenized mutant lines that are likely resistant/tolerant to HLB. The progeny plants are growing in the greenhouse.



Support role of the Citrus Core Transformation Facility remains crucial for research leading to production of Citrus plants that may be tolerant or resistant to diseases

Report Date: 01/08/2016   Project: 15-033C   Year: 2015

Support role of the Citrus Core Transformation Facility remains crucial for research leading to production of Citrus plants that may be tolerant or resistant to diseases

Report Date: 01/08/2016
Project: 15-033C   Year: 2015
Category: Horticultural & Management
Author: Vladimir Orbovic
Sponsor: Citrus Research and Development Foundation

During the last quarter of 2015 Core Citrus Transformation Facility (CCTF) continued to operate as planned and produced transgenic Citrus plants. The number of orders received for the last three months jumped to nine. Two of those orders were for transgenic Duncan grapefruit and the rest are the set of seven orders for production of genetically modified Pineapple orange. CCTF still has not received two groups of orders announced by prospective clients about 5-6 months ago. Also, one set of orders that included the use of three different vectors was withdrawn and the client is working on re-cloning of all vectors. CCTF produced 51 plants within last quarter. These plant belong to multitude of orders, altogether nine of them, some of which are old and some newer. Six of the produced plants were Valencia oranges, 11 were Duncan grapefruit, and the rest were Carrizo citrange. As I have previously reported to Dr. H. Browning, the analysis of transgenic plants carrying NPR1 gene was successfully completed by Yosvanis Acanda from Mature tissue transformation facility. Out of 67 tested transgenic rootstock plants produced by the CCTF, 23 were shown to be high expressers of NPR1. These plants are being kept in the CCTF s greenhouse until they reach the size at which they can be propagated so that they can serve as rootstocks for both transgenic and WT scion plants.



Contined funding for the mature citrus facility to produce disease tolerant, transgenic citrus

Report Date: 12/21/2015   Project: 15-045C   Year: 2015

Contined funding for the mature citrus facility to produce disease tolerant, transgenic citrus

Report Date: 12/21/2015
Project: 15-045C   Year: 2015
Category: Horticultural & Management
Author: Janice Zale
Sponsor: Citrus Research and Development Foundation

The mature citrus transformation facility continues to produce transgenic events for its clients. Productivity has significantly improved using vectors with reporter genes. Transgenics produced via Agrobacterium can now be supplemented with transgenics produced using biolistics in immature and mature citrus. Scientists have been encouraged to submit vectors with all plant sequences and no pest sequences, which might lessen regulatory hurdles. Genes are now being stacked in an effort to prevent the pathogen from easily overcoming tolerance or resistance. A manuscript is being prepared describing biolistics in immature citrus. Currently, all transgenic events are being transferred to scientists directly without secondary grafting or propagation, unless otherwise requested. To improve efficiencies and lessen potential micrografting incompatibilities, sweet orange is being micrografted onto decapitated sweet orange rootstock. Micrografting losses in mature rootstock have significantly decreased when young shoots are micrografted onto decapitated rootstock grown in high sucrose solution. We are in the process of introducing new breeder lines in which to produce transgenics. Three sweet orange varieties and one grapefruit are being introduced via shoot-tip grafting. Once plants are established, they will be used in budding mature citrus onto rootstock to obtain budstick for transformations. Our website is being updated to reflect current prices and technologies employed.