Plant Improvement


Engineering PAMP-receptor mediated broad spectrum resistance to HLB and canker

Report Date: 01/15/2014   Project: 556   Year: 2013

Engineering PAMP-receptor mediated broad spectrum resistance to HLB and canker

Report Date: 01/15/2014
Project: 556   Year: 2013
Category: Horticultural & Management
Author: Diana Horvath
Sponsor: Citrus Research and Development Foundation

Current status of the research: Objective 1: Generate functional EFR variants (EFR+) recognizing both elf18-Xac and elf18-CLas. In order to develop an efficient system of screening EFR mutants for their binding to elf18-CLas, and in vitro binding system was developed which could be used to screen a mutant phage display library. We demonstrated in vitro binding of both elf18-WT and elf18-CLas to fragments of EFR ectodomain, but not to the ones of related receptor FLS2. Binding of elf18-CLas was weaker than that of elf18-WT, but it was considered that improvements in binding achieved by phage display screening may not be evident considering the binding of WT EFR to elf18-CLas. In addition, recent structural information about FLS2 binding to flg22 indicates the involvement of BAK1 as a co-receptor directly binding the ligand. As the phage display system would not account for this interaction, it may yield mutants which would perturb the binding of BAK1. An alternative system based on split ubiquitin is currently in the process of being investigated, which will hopefully overcome these issues. Additional experiments have also been performed to determine which portion of elf18-CLas is non-functional, by making chimeric elf18 peptides with WT and CLas portions. Both WT-CLas and CLas-WT peptides fail to elicit ROS, indicating there are multiple issues with the function of the elf18-CLas peptide, and thus requiring further investigation. A collaboration is currently being set up with the laboratory of Prof. Chai at Tsinghua to obtain structural information surrounding elf18-WT and elf18-CLas binding to EFR, which would enable more straight-forward testable hypotheses. Objective 3: Generate transgenic citrus plants expressing both EFR+ and XA21-EFRchim. Vectors are currently being constructed in the pCAMBIA backbone, under the expression of the 35S/FMV promoter. These constructs will contain: EFR; XA21; both EFR and XA21; and EFR and XA21:EFR chimeric. Cloning of these constructs should be completed in the next few weeks and will then be passed on to the Moore laboratory for transformation in citrus.



Citrus Core Transformation Facility as a platform for testing of different genes and/or sequences that have potential to render Citrus plants tolerant or resistant to diseases

Report Date: 01/14/2014   Project: 579   Year: 2013

Citrus Core Transformation Facility as a platform for testing of different genes and/or sequences that have potential to render Citrus plants tolerant or resistant to diseases

Report Date: 01/14/2014
Project: 579   Year: 2013
Category: Horticultural & Management
Author: Vladimir Orbovic
Sponsor: Citrus Research and Development Foundation

In the previous three months Core Citrus Transformation Facility (CCTF) has continued to provide services for production of transgenic material to interested clients. In comparison with the third quarter of 2013, productivity was higher in the last quarter. Within this quarter, CCTF has received eleven orders. For five of those orders together with the other two from previous quarter, limited number of co-incubation experiments was performed as they required Valencia seedlings which are out of season. Other orders required the work with Duncan seedlings and experiments were performed at full capacity. Considerable amount of work was put into few orders placed in the first half of the 2013. In coordination with the client who ordered these plants, efforts are continuing to find out if the genes requested to be introduced into citrus have negative developmental effect that is hindering production. Additional six vectors and/or Agrobacterium strains received from the same client fall into the group were problems with the (common) PCR primers developed and are not solved yet. Since for all except two current orders, screen for putatively transgenic shoots is done based on PCR reaction, the work on the orders with questionable PCR primers is stalled. Plants that were produced within these three months are from the following orders: pN4-one plant, pN5-one plant, pN7-two plants, pX28- six plants, pX19- 23 plants, pTMN1- seven plants, and pMG105- two plants. Altogether 47 plants were produced and they were all Duncan grapefruit. Despite problematic nature of some recent orders, they are being placed at high volume which shows continued need for the CCTF services.



High-Throughput Screening of Transgenic Citrus for HLB Resistance

Report Date: 01/13/2014   Project: 502   Year: 2013

High-Throughput Screening of Transgenic Citrus for HLB Resistance

Report Date: 01/13/2014
Project: 502   Year: 2013
Category: Horticultural & Management
Author: Calvin Arnold
Sponsor: Citrus Research and Development Foundation

USDA-ARS-USHRL, Fort Pierce Florida is producing thousands of scion or rootstock plants transformed to express peptides that might mitigate HLB. The more rapidly this germplasm can be evaluated, the sooner we will be able to identify transgenic strategies for controlling HLB. The purpose of this project is to support a high-throughput facility to evaluate transgenic citrus for HLB-resistance. This screening program supports two USHRL projects funded by CRDF for transforming citrus. Non-transgenic citrus can also be subjected to the screening program. CRDF funds are being used for the inoculation steps of the program. Briefly, individual plants are caged with infected psyllids for two weeks, and then housed for six months in a greenhouse with an open infestation of infected psyllids. Plants are then moved into a psyllid-free greenhouse and evaluated for growth, HLB-symptoms and Las titer. To date on this project, it funds a technician dedicated to the project, a career technician has been assigned part-time to oversee all aspects of the project, two small air-conditioned greenhouses for rearing psyllids are in use, and 18 individual CLas-infected ACP colonies located in these houses are being used for caged infestations. Additionally, we established new colonies in a walk-in chamber at USHRL to supplement production of hot ACP. A total of 4,472 transgenic plants have passed through inoculation process. A total of 89,810 psyllids have been used in no-choice inoculations. USDA-ARS is providing approximately $18,000 worth of PCR-testing annually to track CLas levels in psyllids and rearing plants. Additionally, steps to manage pest problems (spider mites, thrips and other unwanted insects) are costing an additional $1,400 annually for applications of M-Pede and Tetrasan and releases of beneficial insects. As an offshoot of the research, damage by western flower thrips was so severe that research was conducted to validate damage by this pest to developing flush and facultative predation on ACP, which led to the following publication: Hall, D. G. 2014. Interference by western flower thrips in rearing Asian citrus psyllid: damage to host plants and facultative predation. Crop Protection. (in press). A thrips predator, Orius insidiosus, proved to feed aggressively on immature ACP, thus would be incompatible for thrips control in an ACP rearing operation.



Protective Structure for Citrus Research Foundation Farm to Enhance USDA Citrus Breeding

Report Date: 01/13/2014   Project: 592   Year: 2013

Protective Structure for Citrus Research Foundation Farm to Enhance USDA Citrus Breeding

Report Date: 01/13/2014
Project: 592   Year: 2013
Category: Plant Improvement
Author: Phillip Rucks
Sponsor: Citrus Research and Development Foundation

Construction is completed. Parent plants will be moved into the structure over the next quarter.



Production of Transgenic Commercial Scion Cultivars Resistant to HLB and Canker: Continued AMP Approaches and Novel Transgenic Strategies

Report Date: 01/13/2014   Project: 606   Year: 2013

Production of Transgenic Commercial Scion Cultivars Resistant to HLB and Canker: Continued AMP Approaches and Novel Transgenic Strategies

Report Date: 01/13/2014
Project: 606   Year: 2013
Category: Horticultural & Management
Author: Ed Stover
Sponsor: Citrus Research and Development Foundation

Citrus scions continue to advance which have been transformed with diverse constructs including AMPs, hairpins to suppress PP-2 through RNAi (to test possible reduction in vascular blockage even when CLas is present), a citrus promoter driving citrus defensins (citGRP1 and citGRP2) designed by Bill Belknap of USDA/ARS, Albany, CA), and genes which may induce deciduousness in citrus. Putative transgenic plants of several PP-2 hairpins and of PP-2 directly are grafted in the greenhouse and growing for transgene verification, replication and testing. Over 40 putative transgenic plants transformed with citGRP1 were test by PCR and twenty two of them were confirmed with citGRP1 insertion. RNA was isolated from some of them and RT-PCR showed gene expression. Some transgenics with over-expression of citGRP1 increased resistance to canker by detached leaf assay and infiltration with Xanthomonas. About 10 transgenic Hamlin shoots with citGRP2 were rooted in the medium and nine of them were planted in soil. Over 60 transgenic Carrizo with GRP2 were transferred to soil. DNA was isolated from 20 of them and 19 of them are PCR positive. They will be used for canker resistance screening by detached leaf assay and infiltration. Belknap reports that potatoes transformed with citGRP2 are displaying considerable resistance to Zebra Chip in Washington state. Fifteen transgenic Carrizo and seven transgenic Hamlin with peach dormancy related gene MADS6 were planted in soil and they are ready for DNA isolation. In addition, numerous putative transformants are present on the selective media transformed with different constructs. A chimeral construct that should enhance AMP effectiveness (designed by Goutam Gupta of Los Alamos National Lab) is being tested. Many kanamycin resistant transformants were generated on the selective media. About twenty kanamycin resistant shoots are rooted in-vitro and three Hamlin transformants are in soil. To explore broad spectrum resistance, a flagellin receptor gene FLS2 from tobacco was cloned into pBinARSplus vector (collaboration with Duan lab). Flagellins are frequently PAMPS (pathogenesis associated molecular patterns) in disease systems and CLas has a full flagellin gene despite having no flagella detected to date. The consensus FLS2 clone was obtained and used to transform Hamlin and Carrizo so that resistance transduction may be enhanced in citrus responding to HLB and other diseases. Many putative transformants were generated on the selective media. About ninety transgenic shoots were rooted with eighty Carrizo and ten Hamlin transformants planted in soil. DNA was isolated from 80 of them: 38 Carrizo and 7 Hamlin are positive by PCR test. Reactive Oxygen Species (ROS) assay and canker resistance test will be performed soon. Other targets identified in genomic analyses are also being pursued. A series of transgenics scions produced in the last several years continue to move forward in the testing pipeline. Several D35S::D4E1 sweet oranges show initial growth in the field which exceeds that of controls. A large number of ubiquitin::D4E1 and WDV::D4E1 plants and smaller numbers with other AMPs are replicated and in early stages of testing.



A secure site for testing transgenic and conventional citrus for HLB and psyllid resistance

Report Date: 01/13/2014   Project: 220   Year: 2013

A secure site for testing transgenic and conventional citrus for HLB and psyllid resistance

Report Date: 01/13/2014
Project: 220   Year: 2013
Category: Horticultural & Management
Author: Ed Stover
Sponsor: Citrus Research and Development Foundation

A transgenic test site at the USDA/ARS USHRL Picos Farm in Ft. Pierce supports HLB/ACP/Citrus Canker resistance screening for the citrus research community. There are numerous experiments in place at this site where HLB, ACP, and citrus canker are widespread. The first trees have been in place for over three years. Dr. Jude Grosser of UF has provided ~600 transgenic citrus plants expressing genes expected to provide HLB/canker resistance, which have been planted in the test site. Dr. Grosser planted an additional group of trees including preinoculated trees of sweet orange on a complex tetraploid rootstock that appeared to confer HLB resistance in an earlier test. Dr. Kim Bowman has planted several hundred rootstock genotypes, and Ed Stover 50 sweet oranges (400 trees due to replication) transformed with the antimicrobial peptide D4E1. Texas A&M Anti-ACP transgenics produced by Erik Mirkov and expressing the snow-drop Lectin (to suppress ACP) have been planted along with 150 sweet orange transgenics from USDA expressing the garlic lectin. Eliezer Louzada of Texas A&M has permission to plant his transgenics on this site, which have altered Ca metabolism to target canker, HLB and other diseases. More than 120 citranges, from a well-characterized mapping population, and other trifoliate hybrids (+ sweet orange standards) have been planted in a replicated trial in collaboration with Fred Gmitter of UF and Mikeal Roose of UCRiverside. Plants are being monitored for CLas development and HLB symptoms. Data from this trial should provide information on markers and perhaps genes associated with HLB resistance, for use in transgenic and conventional breeding. Dr. Roose has completed initial genotyping on a sample of the test material using a “genotyping by sequencing” approach. So far, the 1/16th poncirus hybrid nicknamed Gnarlyglo is growing extraordinarily well. It is being used aggressively as a parent in conventional breeding. In a project led by Richard Lee, an array of seedlings from the Germplasm Repository are in place, with half preinoculated with Liberibacter. Additional plantings are welcome from the research community.



Use of an early flowering gene in citrus to rapidly transfer disease resistance from citrus relatives into cultivated types

Report Date: 01/06/2014   Project: 573   Year: 2013

Use of an early flowering gene in citrus to rapidly transfer disease resistance from citrus relatives into cultivated types

Report Date: 01/06/2014
Project: 573   Year: 2013
Category: Horticultural & Management
Author: Gloria Moore
Sponsor: Citrus Research and Development Foundation

cDNA and genomic DNA sequences from the three FT citrus constructs were aligned with GeneBank’s published Citrus Unshiu sequences to properly asses the identity of the constructs being used to transform tobacco and citrus. The evolutionary history was inferred using the Neighbor-Joining method with a total of 10 nucleotide sequences. The results display an optimal tree revealing that FT3 is the most different FT. Also, the analysis shows that ciFT1 and ciFT2 cluster together and display high sequence similarity, indicating that these genes might in fact be alleles and not two separate genes. The one year study of the in vivo tracking of FT1, FT2, and FT3 in various citrus trees differing in age and phenotype is currently being repeated with higher concentrations of cDNA to solidify data and four candidate genes in the flowering pathway (FLD, FLC, ELF5, and AP1) have been added to the study to determine their involvement in flowering time and what effect they might have in the induction of the three FT genes. Results and statistical analysis from the quantitative real time PCR for FT1 and FT2 are being analyzed to further prove the relationship between FT1 and FT2 as being allelic. Tobacco ciFT3 transgenic lines from T1 and T2 generations where studied in order to determine the segregation pattern for ciFT3. GUS histochemical testing was done on germinated seedlings from four lines of T1 plants and four lines of T2 plants. Results show a that the transgene is passed on to offspring in a stable manner and in accordance with expected segregation ratios given a single gene insertion assuming heterozygous parents or more than one genetic insertion of the transgene. One T2 line in particular appears to be homozygous for the GUS gene, indicating that all offspring should have the ciFT3 gene which induces early flowering. This segregation data will be included in the transgenic tobacco manuscript currently being written. The endogenous ciFT3 promoter was successfully cloned to be used in the transcription activator-like (TAL) effector system inducible by methoxyfenozide that will activate the naturally present FT3 gene in citrus.



Creation, Development, and Screening of Citrus Germplasm for Resistance to HLB and Citrus Canker (Core Breeding)

Report Date: 01/05/2014   Project: 539   Year: 2013

Creation, Development, and Screening of Citrus Germplasm for Resistance to HLB and Citrus Canker (Core Breeding)

Report Date: 01/05/2014
Project: 539   Year: 2013
Category: Plant Improvement
Author: Fred Gmitter
Sponsor: Citrus Research and Development Foundation

This project is built on the legacy of materials produced and field trials planted across the past several years. The objectives are to evaluate existing families and created germplasm in the field and in greenhouses for their responses to HLB and citrus canker, to carefully observe and document rootstock effects on severity and rates of progression of HLB symptoms, and to maintain the facilities and activities involved in the state-wide assessment activities. Assessments of HLB field tolerance have been carried out in the vast collection of raw germplasm that exists on UF and collaborating growers’ property. Twelve individual rootstock trials planted in SW Florida, the Indian River region, and along the Ridge have been carefully observed for performance against HLB. In several cases these observations were made in a quantifiable fashion, measuring tree growth and estimating severity of symptom expression. In a few rootstock trials with late season scions, we collected data to document yields, fruit and juice quality, and fruit drop, and to correlate the disease rankings with yield performance. We continued monitoring those already identified healthy, albeit infected trees, showing high yields of normal fruit; some of these have been included on the CRDF Rootstock Matrix. Rootstock seedlings of 100 accessions were previously grafted with HLB-positive Valencia budwood, and those growing out normal flush were selected and exposed to hot ACP populations in greenhouse conditions for one month. Under DPI permit, these trees were planted in a high-pressure, unsprayed grove on the east coast; we have continued to assess these trees. A total of 295 individual candidate rootstock hybrids (includes diploids and tetraploids from 10 different crosses) were selected from a screen for calcareous soil/Phytophthora tolerance; of these, 235 were successfully grafted with large budsticks of HLB-infected Valencia, most have flushed out, and many are showing no symptoms at present. Seed trees are being propagated simultaneously from these 235 individuals, by rooting the tops that have been removed upon grafting. Thirty HLB-Valencia grafted trees on candidate rootstock hybrids were rotated out of the ‘hot psyllid’ house (now ready for field planting), and another set of 50 were entered; these rootstocks include both 2x and 4x hybrids. As the citrus industry has become aware of the unusual performance of assorted rootstocks from our breeding program that are planted in field trials affected by HLB, there has come a huge interest in propagation and planting of these trees on a large scale in the various growing areas in the state. We had already provided substantial quantities of seed from some of these outstanding HLB-tolerant candidates to a major grower for propagation of trees to be planted out in large blocks (up to one acre in size per rootstock); additional seeds of other selected rootstocks have been provided to the same grower, as well as to another citrus nursery business, all for the purposes of large scale field trials. Rootstock liners are being grown now, and previously grown rootstocks are being budded with commercial scions. Information has been collected to protect the IP in preparation for the upcoming release of the new UF-CREC rootstocks on the CRDF Rootstock Matrix. Seed trees exist for some, but not all of these selections; for those which saw their source trees burned a few years ago during canker eradication efforts, we have lifted roots to stimulate shoot development so we can recover these potentially valuable rootstocks for increase and production. Materials have been sent to the DPI PTP for STG and indexing, so certified materials can be made available to nurseries and TC companies for rapid increase of those trees currently with inadequate seed supplies. Finally, trees have been produced for 2 new rootstock trials, one with grapefruit on the east coast, and a second with a mandarin scion in SW Florida.



Evaluation of rootstocks appropriate for higher density groves and advanced citrus production systems leading to a sustainable, profitable Florida citrus industry

Report Date: 01/05/2014   Project: 615   Year: 2013

Evaluation of rootstocks appropriate for higher density groves and advanced citrus production systems leading to a sustainable, profitable Florida citrus industry

Report Date: 01/05/2014
Project: 615   Year: 2013
Category: Plant Improvement
Author: Fred Gmitter
Sponsor: Citrus Research and Development Foundation

HLB’s impacts have led to grower interest in advanced production and harvesting systems with the potential for early and sustainable yield, as well as ease of harvest and other management efficiencies. In the absence of a long-term HLB solution, grove life may be only 12-15 years. A different production approach is required, and higher density plantings with smaller trees managed with intensive cultural systems may be a solution. The goal of this project is to identify appropriate rootstocks among exiting field trials and those soon to be planted that are well suited to advanced citrus production and harvesting systems. Existing field trials previously planted with size-controlling rootstock candidates were monitored for tree growth and disease incidence, including the portion of the St. Helena project planted with dwarfing selections, and a 40-acre Hamlin/Valencia cooperative rootstock trial with trees planted between 300-500/acre. The latter planting is 3 years old, and yield data were collected on the Hamlin portion of the planting last winter and recently from the Valencia portion. Seed trees for selected dwarfing rootstocks, already showing good performance, were propagated and some were planted, to support expanded trials in the future. Some new rootstocks from the CRDF Rootstock Matrix selected for their potential in high density plantings through good tree size control were entered into the DPI Parent Tree Program for cleanup by shoot tip grafting followed by indexing, to provide certified budwood of these rootstocks for commercial nurseries upon their release. A new rootstock trial with Ray Ruby grapefruit and containing several tree size control candidates coming from crosses made using Flying Dragon as a seed parent (to capture the dwarfing trait, crosses must be made in this direction) was planted this spring, and the remaining selections for the trial were grown off and planted in late summer 2013; more than 2000 trees total were planted. Seedlings of some other Flying Dragon hybrids have come through the ‘HLB gauntlet’ screening process (grafted with CLas-infected Valencia budsticks, and then cycled through a hot psyllid house, ending with no obvious HLB symptoms); these will be planted in the field, under a DPI permit for further observation.



Accelerating Citrus Gene Discovery for HLB Tolerance/Resistance

Report Date: 01/05/2014   Project: 724   Year: 2013

Accelerating Citrus Gene Discovery for HLB Tolerance/Resistance

Report Date: 01/05/2014
Project: 724   Year: 2013
Category: Plant Improvement
Author: Fred Gmitter
Sponsor: Citrus Research and Development Foundation

A number of Poncirus and Citrus cultivars have been recently found to be tolerant to HLB. Microarray-based profiling of the transcriptomes of two cultivars with HLB tolerance (Poncirus hybrid US-897and rough lemon) and two cultivars without HLB tolerance have identified over 1,150 genes that are differentially expressed in HLB-tolerant cultivars. These genes constitute a valuable pool of potential candidate genes from which true HLB tolerance genes may be identified. Additional candidate genes have recently become available from an RNA-seq experiment using rough lemon and sweet orange in a comparison similar to what was done with the Affymetrix microarray work in our lab (Fan, et al., 2012). This project aims to screen these potential candidate genes using high throughput target capture, massively parallel sequencing of targeted gene regions, and genetic association and linkage analysis to find the most likely candidate gene(s) for HLB tolerance in Poncirus and rough lemon. After several rounds of candidate searches, we have recruited suitable post-doctoral research associates. One post-doc scheduled to arrive in January 2014 and another to begin shortly thereafter, so it is our intention to accelerate the project substantially at that time. In the meantime, sequencing of the Poncirus and rough lemon genomes are in process. Plant materials to support the project are being collected and grown, for downstream applications. We are in the process of compiling the list of nearly 1,300 candidate genes and downloading their sequences for designing a high throughput target capture system that will be used to target sequencing, genetic association and linkage analysis.



Characterization of Huanglongbing (HLB) survivors in the severely infected and/or abandoned groves

Report Date: 01/03/2014   Project: 537   Year: 2014

Characterization of Huanglongbing (HLB) survivors in the severely infected and/or abandoned groves

Report Date: 01/03/2014
Project: 537   Year: 2014
Category: Plant Improvement
Author: Fred Gmitter
Sponsor: Citrus Research and Development Foundation

We have continued to monitor previously identified candidate survivor trees at the CREC, the GCREC, and some Polk County commercial groves where we have planted out materials from the CREC breeding program. Most of the trees now have begun to display symptoms after more than 24 months of observation, though there remain a few still unaffected as of March 2014. Trees at an abandoned location in Palm Beach County, that retain reasonably good condition and freedom from obvious symptoms, were sampled for both budwood and root tissues. Budwood samples were propagated onto healthy rootstock seedlings at the CREC. In addition, root samples were provided. We were able to collect rootsprouts from some of the trees that were decapitated; we have propagated from these rootsprouts, by budding and by rooted cuttings. These small trees are growing of for further propagations to test their responses to HLB. . We extracted DNA from these sprouts and compared their DNA fingerprints with what we produced from feeder roots collected previously, as expected, the fingerprints were identical. New rootstock samples collected from trees were used to confirm nucellar embryony. Thus far, all except one of the rootstocks collected has been shown to be a nucellar seedling of the presumed rootstock. Routine fingerprinting of all scion varieties sampled has shown them all to be true to type; this does not discount the possibility of mutations for HLB tolerance/resistance. We have gathered information on several other possible survivors identified and it was decided to allow more time to determine whether the these trees warranted more careful analysis because they generally represented quite a few trees in each location. In other instances, the reported survivors actually exhibited more symptoms than would qualify as a ‘healthy’ survivor. Two hybrids of unknown origin that we have been observing for several years in CREC groves, and were found to be HLB-free have begun to display minor and scattered symptoms. Recent qPCR has also shown the presence of CLas, though at very low levels; hwever, these trees are exhibiting ever-increasing severity of disease. New reports of survivors have come in from Highlands, Lee, Collier, Indian River, Lake, and Marion Counties; several have been documented, and some have been visited by the PI or extension personnel; materials have not yet been collected, pending further assessment of disease in 2014.



Characterization of Huanglongbing (HLB) survivors in the severely infected and/or abandoned groves

Report Date: 01/03/2014   Project: 537   Year: 2013

Characterization of Huanglongbing (HLB) survivors in the severely infected and/or abandoned groves

Report Date: 01/03/2014
Project: 537   Year: 2013
Category: Plant Improvement
Author: Fred Gmitter
Sponsor: Citrus Research and Development Foundation

We have continued to monitor previously identified candidate survivor trees at the CREC, the GCREC, and some Polk County commercial groves where we have planted out materials from the CREC breeding program. Most of the trees now have begun to display symptoms after more than 18 months of observation, though there remain a few still unaffected as of December 2013. Trees at an abandoned location in Palm Beach County, that retain reasonably good condition and freedom from obvious symptoms, have been sampled for both budwood and root tissues. Budwood samples were propagated onto healthy rootstock seedlings at the CREC. In addition, root samples were provided. In the past three months we have collected rootsprouts from some of the trees that were decapitated; we have propagated from these rootsprouts, by budding and by rooted cuttings. We extracted DNA from these sprouts and compared their DNA fingerprints with what we produced from feeder roots collected previously, as expected, the fingerprints were identical. These rootstocks will be increased and grown off for future experiments, to test their responses to HLB. New rootstock samples collected from trees were used to confirm nucellar embryony. Thus far, all except one of the rootstocks collected has been shown to be a nucellar seedling of the presumed rootstock. Routine fingerprinting of all scion varieties sampled has shown them all to be true to type. We have had information on several other possible survivors collected, and in these cases it was decided to allow more time to determine whether the these trees warranted more careful analysis because they generally represented quite a few trees in each location. In other instances, the reported survivors actually exhibited more symptoms than would qualify as a ‘healthy’ survivor. Two hybrids of unknown origin that we have been observing for several years in CREC groves, and were found to be HLB-free have begun to display minor and scattered symptoms. Recent qPCR has also shown the presence of CLas, though at very low levels.



Characterization of Huanglongbing (HLB) survivors in the severely infected and/or abandoned groves

Report Date: 01/03/2014   Project: 537   Year: 2013

Characterization of Huanglongbing (HLB) survivors in the severely infected and/or abandoned groves

Report Date: 01/03/2014
Project: 537   Year: 2013
Category: Plant Improvement
Author: Fred Gmitter
Sponsor: Citrus Research and Development Foundation

This three-year project is to continue the search and evaluation of citrus tree survivors found under high pressure of HLB and its pathogen, on the basis of additional visits to groves in severely HLB-affected production areas, primarily in Florida, but also in areas of southern China that we have visited previously. Past exploration in China has identified three such trees and at least one of these remains free of HLB after several years. We have previously propagated a few trees in Florida from Pineapple orange budwood collected in Martin County. We have continued to monitor previously identified candidate trees at the CREC, the GCREC, and some Polk County commercial groves where we have planted out materials from the CREC breeding program. Some of the trees now have begun to display symptoms after more than 15 months of observation, but there remain some that are still unaffected as of September 2013. Trees at an abandoned location in Palm Beach County, that retain reasonably good condition and freedom from obvious symptoms, have been sampled for both budwood and root tissues. Budwood samples were propagated onto healthy rootstock seedlings at the CREC. In addition, root samples were provided. We extracted DNA from these, and from several of the other trees mentioned above, to characterize the rootstocks on which they are growing. In most cases we have been told what the original trees were supposed to have been grown on, and we wanted to be able to confirm whether the root system is the variety expected, or if it is a chance zygotic seedling. To this end, we have improved our DNA extraction procedures from root tissues, so we can now reliably fingerprint the rootstocks. We have done so for nearly all of the candidate trees on which we have been working, and up until now all except one of the rootstocks has been shown to be on nucellar seedlings of the presumed rootstock. Routine fingerprinting of all scion varieties sampled has shown them all to be true to type. We have had information on several other possible survivors collected, and in these cases it was decided to allow more time to determine whether the these trees warranted more careful analysis because they generally represented quite a few trees in each location. In other instances, the reported survivors actually exhibited more symptoms than would qualify as a ‘healthy’ survivor.



Host genetic control of interference in Asian citrus psyllid life cycles

Report Date: 01/03/2014   Project: 538   Year: 2013

Host genetic control of interference in Asian citrus psyllid life cycles

Report Date: 01/03/2014
Project: 538   Year: 2013
Category: Plant Improvement
Author: Fred Gmitter
Sponsor: Citrus Research and Development Foundation

Certain citrus cultivars, such as Cleopatra mandarin, seem to be incapable of supporting the full developmental life cycles of psyllids. Preliminary experiments with hybrids in a Cleopatra-derived family, using caged psyllid nymphs on pesticide-free, field grown trees, indicated possible genetic transmission to some of the progeny. A total of 91 trees in three families produced by crossing Cleopatra mandarin with three male parents were selected from field plantings for the project and for future evaluations. We have propagated replicates from each individual for assessments of psyllid reproduction and feeding behavior in controlled greenhouse and laboratory conditions, and transferred these to Dr. Rogers for greenhouse and lab studies, that will be conducted once the trees have reached sufficient size. A first round of caged tree limb experiments using a subset of the total trees available was completed. The trees were selectively pruned to provide abundant young flush. Specific numbers of nymphs were placed onto each of two branches per tree with flush, and cages were carefully placed over the branches. Data on survival, numbers of adults, egg deposition, etc. were collected. These results are being compared to results from previous preliminary experiments conducted in the field. Several of the hybrids were unable to support adult psyllid development on both branches. A second round of field testing will be delayed until spring, to ensure good flush growth.



Identification and mapping of the genes controlling resistance to Huanglongbing (HLB)

Report Date: 01/02/2014   Project: 536   Year: 2014

Identification and mapping of the genes controlling resistance to Huanglongbing (HLB)

Report Date: 01/02/2014
Project: 536   Year: 2014
Category: Plant Improvement
Author: Fred Gmitter
Sponsor: Citrus Research and Development Foundation

We have quantified HLB symptom rankings for all trees in the field planting, this past October; symptoms and RT-PCR have not been studied through the winter months, as several of the hybrids are semi-deciduous, which complicates phenotyping and accuracy of RT-PCR results. We have found at least one tree to be PCR+ for almost all selections assayed, though some of these have very high Ct values indicating very low concentrations of CLas DNA in such trees; these trees will be monitored going forward to see whether CT values decrease remain stable, or increase. The pure trifoliate orange types in the planting remain essentially PCR-, while control sweet orange trees are quite obviously affected by symptoms, and they also had low Ct values, indicating substantial CLas population levels. The hybrids appear to be segregating for tolerance, though not into clear and distinct categories. Leaf samples were collected from all individuals in the field trial. DNA was extracted from more than 840 individuals total for qPCR runs, which have been completed and summarized. The same trends we see in our monitoring subset data are seen in the total populations. We have propagated plants from the mapping population to provide materials for greenhouse phenotyping via graft inoculations, increasing both the number of individuals propagated as well as the number of replicates of each genotype. We cannot accommodate the entire population in replicated fashion because of greenhouse space limitations, so we have moved selected subsets of individuals in the greenhouse to compare with phenotypes observed in the field; these plants are growing to a size sufficient for the graft inoculations. We are increasing simultaneously the supply of available budwood for inoculations. We have produced a source of inoculum in selected citrus accessions, which was initiated from a field source. This strain of CLas was passed first through Carrizo citrange so that it is free of CTV, by virtue of the immunity of Carrizo to CTV; this was done to remove possible complications in the evaluations that may be associated with CTV-HLB interactions. The selected hosts grow quickly and attain high titer of CLas as evidenced by low CT values.