Plant Improvement


Understanding and Manipulating the Interaction of Rootstocks and Constant Nutrition to Enhance the Establishment, Longevity and Profitability of Citrus Plantings in HLB-Endemic Areas

Report Date: 04/26/2017   Project: 05-013   Year: 2017

Understanding and Manipulating the Interaction of Rootstocks and Constant Nutrition to Enhance the Establishment, Longevity and Profitability of Citrus Plantings in HLB-Endemic Areas

Report Date: 04/26/2017
Project: 05-013   Year: 2017
Category: Plant Improvement
Author: Jude Grosser
Sponsor: Citrus Research and Development Foundation

Objective 1. (Greenhouse experiment): All liners were treated with the various CRF combinations one month prior to grafting. Stick-grafting of seedlings of the required rootstocks: x639, Swingle, WGFT+50-7, UFR-3 and UFR-15 potted in round citripots with HLB-infected Valencia were completed. 12 trees were grafted per treatment per rootstock. There were only a few failed grafts that are currently being repeated. Objective III: To evaluate the effect of complete, balanced and constant nutrition on HLB-affected mature trees (composition, delivery and economics). The treatments have been applied for one year at both sites. The second year first quarter applications of all the treatments have been completed and second year tree health parameters have been collected. The fruits at both the locations have been harvested and evaluated. Although there were obvious trends suggesting an advantage for applications combining traditional fertilizer with CRF, there was no statistically significant differences (95% confidence level) among the yield of different treatments at either site. There were no statistically significant differences in the fruit quality of fruits from different treatment and growers control at both the Ft. Meade and Arcadia locations. Although at the Arcadia site, treatments 9 and 10 resulted in better juice quality than treatment 6. Overall, no significant differences (95% confidence level) among growers control and treatments were found. This is not unexpected, as we believe it takes time to restore the root systems of impacted trees; thus we expect to see greater differences in the year 2 data. These results were also presented on April 4th, 2017 at Citrus Institute, Avon Park. Ojective 5. (funded by Orie Lee, using donated fertilizer products): Alligator Vernia/Rough Lemon Enhanced Nutrition Experiment Treatments: 6 tree plots (randomized), 2 plots per treatment treatments 2 times per year. Yield data was taken after one year, and all treatments yielded significantly better than the non-treated control except for the 4x polycoated sodium borate treatment.



Functional disruption of the NodT outer membrane protein of Candidatus Liberibacter asiaticus for rootstock-mediated resistance to citrus greening using a phloem-directed, single-chain antibody

Report Date: 04/26/2017   Project: 11-125-424   Year: 2017

Functional disruption of the NodT outer membrane protein of Candidatus Liberibacter asiaticus for rootstock-mediated resistance to citrus greening using a phloem-directed, single-chain antibody

Report Date: 04/26/2017
Project: 11-125-424   Year: 2017
Category: Horticultural & Management
Author: Tim McNellis
Sponsor: Citrus Research and Development Foundation

During the period of January, February, and March of 2017, progress was made in planning for HLB resistance testing of the grapefruit lines expressing the FLT-antiNodT fusion protein. Through ongoing discussions mediated by Dr. Catherine Hatcher, Dr. McNellis is in contact with Dr. Johnny Ferrarezi at the Indian River Research and Education Center at Ft. Pierce, and others, to perform no-choice psyllid feeding tests on ‘Duncan’ grapefruit plants expressing the FLT-antiNodT protein. In addition, we are working with Dr. Ed Stover to get some of the FLT-antiNodT plants available at Ft. Pierce to be included in a field test underway at the Pecos farm at Ft. Pierce. Dr. Gottwald’s lab has successfully propagated all eight of the FLT-antiNodT grapefruit lines at Ft. Pierce, with 6-18 plants available for each line, for a total of 75 rooted FLT-antiNodT plants available at Ft. Pierce. During the next reporting period, we plan to apply for permitting to participate in the field test with the FLT-antiNodT lines and initiate the no-choice feeding HLB inoculation test. Dr. McNellis was also invited to participate in the May 22, 2017, Forum on Citrus Breeding and Transformation for HLB resistance hosted by the National Academies of Sciences, Engineering, and Medicine in Irvine, CA, and he plans to attend in person and present at the forum.



Create citrus varieties resistant or tolerant to Huanglongbing through transgenic and nontransgenic approaches

Report Date: 04/15/2017   Project: 15-020   Year: 2017

Create citrus varieties resistant or tolerant to Huanglongbing through transgenic and nontransgenic approaches

Report Date: 04/15/2017
Project: 15-020   Year: 2017
Category: Horticultural & Management
Author: Zhonglin Mou
Sponsor: Citrus Research and Development Foundation

The project has three objectives: (1) Obtain mature tissues of the best transgenic lines. (2) Determine whether transgenics prevent psyllids from being infected. (3) Continue testing generations of vegetative propagation from the best transgenic lines. The following work has been conducted in this quarter: (1) Analyzed transgene product (protein) levels in 30 independent rootstock transgenic lines and identified three lines accumulating high levels of the transgene product, one Swingle line and two Carrizo lines. These three rootstock lines will be propagated in the coming quarter. (2) After inoculation of the HLB-tolerant transgenic lines with the flowering promoting gene FT3, all three lines have flowered. We are propagating these lines for field trials. (3) One more cage experiment testing psyllid reproduction on transgenic plants was performed. Results showed that only one line consistently prevents reproduction of psyllids, suggesting a T-DNA insertion mutation in this line. We will clone the citrus gene required for psyllid reproduction in the coming quarter. (4) More replicates were made for transgenic lines with low numbers of progenies and these progeny plants will be tested in the coming quarter.



Create citrus varieties resistant or tolerant to Huanglongbing through transgenic and nontransgenic approaches

Report Date: 04/15/2017   Project: 15-020   Year: 2017

Create citrus varieties resistant or tolerant to Huanglongbing through transgenic and nontransgenic approaches

Report Date: 04/15/2017
Project: 15-020   Year: 2017
Category: Horticultural & Management
Author: Zhonglin Mou
Sponsor: Citrus Research and Development Foundation

The project has three objectives: (1) Obtain mature tissues of the best transgenic lines. (2) Determine whether transgenics prevent psyllids from being infected. (3) Continue testing generations of vegetative propagation from the best transgenic lines. The following work has been conducted in this quarter: (1) Analyzed transgene expression in 30 independent rootstock transgenic lines and identified lines expressing high levels of the transgene. Accumulation of the transgene product (protein) will be tested in the coming quarter. Lines accumulating the highest levels of protein will be selected for further usage. (2) More propagation has been made for the HLB-tolerant trangenic line that has flowered. The progenies are growing. For the lines that have not flowered, we reinoculated the plants with CTV carrying the flower-promoting gene FT3. (3) Another cage experiment for testing if transgenics prevent psyllids from being infected has been set up and results will be obtained in the coming quarter. (4) Transgenic lines with low numbers of progenies have been propagated. More progeny plants are growing and will be tested when they are ready.



Development of Supersour and Other Promising Rootstocks for Florida

Report Date: 04/13/2017   Project: 15-002   Year: 2017

Development of Supersour and Other Promising Rootstocks for Florida

Report Date: 04/13/2017
Project: 15-002   Year: 2017
Category: Plant Improvement
Author: Kim Bowman
Sponsor: Citrus Research and Development Foundation

Field performance information this quarter was collected on more than 300 new rootstocks in 19 different replicated active USDA field trials established prior to 2017, including assessment of tree growth, tree health, fruit yield, fruit quality, and tolerance or resistance to HLB and other diseases. Evaluation of trials usually includes periodic testing of trees for Las infection, using PCR. The trials include rootstocks currently in Florida industry use (such as US-802, US-812, US-897, and US-942), as well as SuperSour hybrids not yet released. Additional trees in the USDA nursery now will be used to plant seven additional replicated field trials in 2017. The combined list of current trials and those that will planted in 2017 is shown in the table below, along with additional details on each trial. The focus of data collection from these trials is on parameters that are most relevant to assessing rootstock effects on tree tolerance to HLB. Our aim is to find new rootstocks that grow healthier trees with more fruit despite HLB, than the best rootstocks currently available. In addition to these 26 trials, I am working with the UF breeding team under two HLB-MAC projects to establish at least 13 additional rootstock field trials over the next 12 months, combining the best advanced new rootstocks from the USDA and UF breeding programs. A comprehensive new NIFA SCRI-funded rootstock breeding project involving UF and my program should begin soon, improving the integration of the rootstock efforts of the two institutions, while also involving other researchers to expand the scope and complexity of the search for plant resistance solutions to the HLB problem. Additional information is available on the USDA rootstock breeding project, on request.



Metabolic profiling to accelerate development of HLB tolerant rootstocks

Report Date: 04/13/2017   Project: 15-003   Year: 2017

Metabolic profiling to accelerate development of HLB tolerant rootstocks

Report Date: 04/13/2017
Project: 15-003   Year: 2017
Category: Plant Improvement
Author: Kim Bowman
Sponsor: Citrus Research and Development Foundation

Objective 1. Identify key metabolites that are associated with rootstock traits. Summary of accomplishments: Rootstock seedlings were grown in the USDA greenhouses and included standard rootstock cultivars and rootstocks developed by the USDA breeding program and in great demand by the industry. To establish metabolite profiles on a set of cultivars with known horticultural traits, we used the four rootstocks Cleopatra, Swingle, Sour orange, and Ridge Pineapple, and assessed the metabolite profiles of leaves and roots at two different seedling stages under greenhouse conditions. This allows us to characterize rootstocks based on their metabolite composition, and to assess the stability of metabolite profiles at different developmental stages. For a subset of the data, analysis has been completed and several compounds have been identified that may be associated with rootstock traits. A manuscript has been prepared and submitted to the journal Plant Science. In addition to these four standard cultivars, other rootstock seedlings were sampled and leaf and root extracts were submitted for GC-TOF MS analysis at the West Coast Metabolomics Center (WCMC), UC-Davis. Data were received in March 2017 and are currently being processed and analyzed by the team. Preliminary results of a selected set of the most recent data were presented at the IRCHLB in Orlando in March 2017. Objective 2. Investigate the effect of grafting on metabolite profiles. Summary of accomplishments: The four standard rootstocks (Cleopatra, Swingle, Ridge, and Sour orange) and other rootstocks developed by the USDA breeding program were analyzed as grafted trees in combination with Valencia and other scions. Trees were grown in the greenhouse or under field conditions at different locations. Comparison of the metabolite profiles of roots and leaves in these grafted trees with profiles obtained for leaves and roots of rootstock seedlings allows us to analyze rootstock and scion interactions, and evaluate how they affect tolerance to HLB and other biotic or abiotic stresses. The different field conditions under which the plants are grown will also aid in identifying environmental effects on metabolite profiles. The latest data set from this part of the study was received in March 2017 and is currently being processed and analyzed. Analysis of a subset of the data has been completed and we are in the process of preparing a manuscript for publication. Objective 3. Establish metabolite profiles of trees on different rootstocks in response to HLB. Summary of accomplishments: A paper was published last year describing our initial research on metabolic profiles of rootstocks with different response to HLB (U. Albrecht, O. Fiehn, K.D. Bowman. 2016. Metabolic variations in different citrus rootstock cultivars associated with different responses to huanglongbing. Plant Physiology and Biochemistry 107:33-44). In addition, an experiment was initiated that included many hundred grafted trees grown in the USDA greenhouses. These trees are composed of Valencia grafted on a diverse array of standard and USDA rootstock cultivars. One set of trees was inoculated with Las using graft-inoculation; a second set of trees was mock-inoculated using the same procedure. Trees were analyzed by PCR for presence of Las in leaf and in root tissue at regular time intervals. A subset of trees was selected, and leaf and root tissues of these plants were collected for metabolite analysis. These samples have been extracted and were sent to WCMS in April 2017. Some of the selected plants are being used for continuing infection and metabolic studies. Experimental design, data collected, analysis, results, and interpretation are too complex to present here. Additional information is available on request.



Engineering Citrus for Canker Resistance

Report Date: 04/13/2017   Project: 15-022   Year: 2017

Engineering Citrus for Canker Resistance

Report Date: 04/13/2017
Project: 15-022   Year: 2017
Category: Horticultural & Management
Author: Lynne Reuber
Sponsor: Citrus Research and Development Foundation

Objective 1: Assess canker resistance conferred by the PAMP receptors EFR and XA21 Three constructs were used for genetic transformation of Duncan grapefruit and sweet orange as part of a previous grant: EFR, EFR coexpressed with XA21, and EFR coexpressed with an XA21:EFR chimera. Seven transgenics have survived and passed a PCR screen, and these have been grafted onto rootstocks. Grafted plants are currently growing, and will be tested for responsiveness to the elf18 ligand for EFR and for canker resistance. To ensure that there will be sufficient events to analyze to come to a conclusion about the effectiveness of these genes, we have initiated more transformations in Duncan grapefruit at the Core Citrus Transformation Facility at UF Lake Alfred. In addition, we have added the recently-identified Cold Shock Protein Receptor (CSPR) to the transformation queue. Selection is underway, but the GFP marker is not expressed in citrus, and therefore the protocol is being optimized for PCR screening. Objective 2: Introduction of the pepper Bs2 disease resistance gene into citrus Two constructs were created to co-express Bs2 with other R genes that may serve as accessory factors for Bs2. These constructs were provided to the Lake Alfred transformation facility, but transformation attempts have so far been unsuccessful. Troubleshooting has indicated that it is likely that the constructs have negative effects in citrus, and therefore work on these constructs has been discontinued. Objective 3: Development of genome editing technologies (Cas9/CRISPR) for citrus improvement The initial target for gene editing is the citrus homolog of Bs5 of pepper. The recessive bs5 resistance allele contains a deletion of two conserved leucines. The citrus Bs5 homologs were sequenced from both Carrizo citrange and Duncan grapefruit, and conserved CRISPR targets were identified. For proof of concept, we are targeting mutating the native citrus Bs5 alleles while simultaneously replacing the gene with the effective resistance allele. Two editing constructs have been created, one targeting the two conserved leucines, and one targeting two sites in the second exon to create a deletion in Bs5. Both constructs have been verified to function by co-delivery into Nicotiana benthamiana leaves with another construct carrying the targeted DNA from Carrizo or Duncan varieties. These constructs have been prioritized for transformation into Carrizo citrange, and transformations are underway at UC Davis. Transformants with mutations in Bs5 that contain the replacement bs5 allele will be selected and tested for canker resistance.



Implementing Transgenic Tools to Produce Commercial Scion Cultivars Resistant to HLB and Canker

Report Date: 04/11/2017   Project: 15-026   Year: 2017

Implementing Transgenic Tools to Produce Commercial Scion Cultivars Resistant to HLB and Canker

Report Date: 04/11/2017
Project: 15-026   Year: 2017
Category: Horticultural & Management
Author: Ed Stover
Sponsor: Citrus Research and Development Foundation

1) Assessed use of isolated leaf inoculation, and small plant destructive sampling: Isolated leaf inoculations do not readily distinguish between resistant and susceptible citrus selections, but may prove useful in identifying nearly immune material. Small plant destructive inoculation assays now permit us to distinguish between susceptible Valencia and resistant Carrizo after 12 weeks. This assay seems to be an efficient way to test transgenics that are expected to kill CLas and experiments are underway. 2) Data collection continues on transgenics. Transgenic plants expressing a modified thionin are promising for HLB resistance and they have been extensively propagated for testing in the greenhouse and the field. Transgenics expressing LuxI from Agrobacterium, and an array of ScFv transgenics (more in 5 below) have also been propagated for testing. 3) Two new chimeral peptides (second generation) have been used to produce many Carrizo plants and shoots of Hamlin, Valencia and Ray Ruby. 4) A Las protein p235 with a nuclear-localization sequence has been identified and studied. Carrizo transformed with this gene displays leaf yellowing similar to that seen in HLB-affected trees. Gene expression levels, determined by RT-qPCR, correlated with HLB-like symptoms. P235 translational fusion with GFP shows the gene product targets to citrus chloroplasts. Transcription data were obtained by RNA-Seq. 5) Antibodies (ScFv) to the Las invA and TolC genes, and constructs to overproduce them, were created by John Hartung under an earlier CRDF project. We have putative transgenic Carrizo reflecting almost 400 independent transgenic events and 17 different ScFv, but only 69 events from 7 ScFv produced proven transgenics ready for testing. These have been replicated by rooting and will be exposed to no-choice CLas+ ACP followed by whole plant destructive assays. 6) To explore broad spectrum resistance, a flagellin receptor gene FLS2 from tobacco was used to transform citrus. Trees expressing NbFLS2 showed significant canker resistance to spray inoculation. Replicated Carrizo and Hamlin were challenged with ACP feeding. Leaves were taken six months after ACP feeding inoculation. DNA was isolated and Las titer was tested. Our preliminary results show that transgenic trees expressing NbFLS2 can reduced Las titer. In-silico analyses are being conducted to develop citrus FLS2 optimized for sensing CLas flagellin. 7) Arabidopsis DMR6 (down mildew resistance 6)-like genes were downregulated in more tolerant Jackson compared to susceptible Marsh grapefruit. DMR6 acts as a suppressor of plant immunity and it is upregulated during pathogen infection. In a gene expression survey of DMR6 orthologs in Hamlin , Clementine , Carrizo , rough lemon, sour orange and citron, expression levels were significantly higher in all CLas-infected trees compared with healthy trees in each citrus genotype. We developed 2 RNA silencing (hairpinRNA) constructs aimed to silencing citrus DMR6 and DLO1 respectively. Citrus DMR6 is silenced in hairpin transgenic plants and with an average silencing efficiency of 41.4%. DMR6 silenced Carrizo plants exhibit moderate to strong activation of plant defense response genes. 8) Optimizing use of a SCAmpP (small circular amphipathatic peptide) platform, was conducted in collaboration with Dr. Belknap and Dr. Thomson of the Western Regional Research Center of USDA/ARS. SCAmpPs were recently identified and have tissue specific expression, including having the most abundant transcript in citrus phloem. Furthermore, members of the SCAmpP family have highly conserved gene architecture but vary markedly in the ultimate gene product. Variants of a tissue-specific SCAmpP were tested using GUS as a reporter gene: removal of the conserved intron reduced tissue specificity and deletion of non-transcribed 5 region reduced expression. Excellent phloem-specific expression is achieved in citrus when a target gene is substituted for the gene encoding the SCAmpP peptide. We are using this promoter aggressively in transgenic work 9) The third generation chimeral peptides were designed based on citrus thionins and citrus lipid binding proteins and plants have been transformed.



High-Throughput Inoculation of Transgenic Citrus for HLB Resistance

Report Date: 02/02/2017   Project: 15-016   Year: 2016

High-Throughput Inoculation of Transgenic Citrus for HLB Resistance

Report Date: 02/02/2017
Project: 15-016   Year: 2016
Category: Horticultural & Management
Author: David Hall
Sponsor: Citrus Research and Development Foundation

The driving force for this project (Hall-15-016) is the need to evaluate citrus transformed to express proteins that might mitigate HLB, which requires citrus be inoculated with CLas. Citrus breeders at USDA-ARS-USHRL, Fort Pierce Florida are producing thousands of scion or rootstock plants transformed to express peptides that might mitigate HLB. The more rapidly this germplasm can be evaluated, the sooner we will be able to identify transgenic strategies for controlling HLB. The purpose of this project is to support a high-throughput facility to evaluate transgenic citrus for HLB resistance. This screening program supports citrus breeding and transformation efforts by Drs. Stover and Bowman. Briefly, individual plants to be inoculated are caged with 20 infected psyllids for two weeks, and then housed for six months in a greenhouse with an open infestation of infected psyllids. Plants are then moved into a psyllid-free greenhouse and evaluated for growth, HLB symptoms and CLas titer, and finally the plants are transplanted to the field where evaluations of resistance continue. CRDF funds for the inoculation program cover the costs associated with establishing and maintaining colonies of infected psyllids; equipment such as insect cages; PCR supplies for assays on psyllid and plant samples from infected colonies; and two GS-7 USDA technicians. A career technician is assigned ~50% to the program. USDA provides for the program two small air-conditioned greenhouses, two walk-in chambers, and a large conventional greenhouse. Currently 18 individual colonies of infected psyllids are maintained. Some of the individual colonies are maintained on CLas-infected lemon plants while others are maintained on CLas-infected citron plants. Update: As of January 1, 2017, a total of 9,494 plants have passed through inoculation process. A total of 297,595 psyllids from colonies of CLas-infected ACP have been used in no-choice inoculations. Not included in these counts of inoculated plants and psyllids used in inoculations are many plants inoculated over the past year to assess transmission rates, which has provided insight into the success of our inoculation methods and strategies for increasing success. Research we recently published showed that seedling citrus with flush is significantly more prone to contracting the HLB pathogen than seedling citrus without flush: Hall, D. G., U. Albrecht, and K. D. Bowman. 2016. Transmission rates of Ca. Liberibacter asiaticus by Asian citrus psyllid are enhanced by the presence and developmental stage of citrus flush. J. Econ. Entomol. 109: 558-563. doi: 10.1093/jee/tow009. Therefore, the program has been changed to ensure that plants to be inoculated have flush. Incidentally, Setamou et al. (2016, J. Econ. Entomol., 109: 1973-1978) published supporting information that transmission rates of CLas are increased when flush is present. The no-choice inoculation step used in our program has been projected to be successful an average of 79% of the time when approximately 70% of ACP placed on a plant test positive for CLas (Ct <36) and have CLas titers of around CT=26 to 29 (success contingent on flush being present on a plant). We are in the process of analyzing data from research comparing success rates using ACP colonies on lemon versus citron, and using ACP colonies from greenhouses versus walk-in chambers.



Application of a natural inducer of systemic acquired resistance and engineering non-host resistance in citrus for controlling citrus diseases

Report Date: 02/01/2017   Project: 754   Year: 2016

Application of a natural inducer of systemic acquired resistance and engineering non-host resistance in citrus for controlling citrus diseases

Report Date: 02/01/2017
Project: 754   Year: 2016
Category: Horticultural & Management
Author: Zhonglin Mou
Sponsor: Citrus Research and Development Foundation

The project has two objectives: (1) Increase citrus disease resistance by activating the natural SAR inducer-mediated defense-signaling pathway. (2) Engineer non-host resistance in citrus to control citrus canker and HLB. In this quarter, we specifically tested the SAR inducer-activated residual activity in potted citrus seedlings. The seedlings were treated by either root drench or foliar infiltration with the SAR inducer. After the first round of disease resistance test, the plants were cut back. Two months later, residual activity in the new flashes was tested. Results showed statistically significant reduction in the number of canker lesions formed in leaves on the plants pre-treated with the SAR inducer. Reduction in the number of lesions was, on average, from 15% at a low dose (0.25 mM) to 40-50% at higher doses of the SAR inducer (5-10 mM). These results demonstrate that the SAR inducer activates strong residual activity in new flushes at least two months after the pre-treatment. We also confirmed the priming effect of the SAR inducer. Briefly, leaves were treated with 1 mM of the SAR inducer. The treated leaves were infected with citrus canker bacterial pathogens 36 hours later. The infected leaf tissues were collected at 0, 4, 8, and 24 hours later, similarly as in the previous experiments. Expression of PAL1,NPR1, PR5, CM1, ICS1, CM1, CM2, and PLDg was analyzed by real-time qPCR. We confirmed that expression of PAL1, NPR1, PR5, CM1, and ICS1 was significantly enhanced by pre-treatment with the SAR inducer, corroborating that the SAR inducer indeed has strong priming effects in citrus.



HLB Resistance and Tolerance in Citrus Scion Breeding

Report Date: 01/10/2017   Project: 15-025   Year: 2016

HLB Resistance and Tolerance in Citrus Scion Breeding

Report Date: 01/10/2017
Project: 15-025   Year: 2016
Category: Plant Improvement
Author: Ed Stover
Sponsor: Citrus Research and Development Foundation

Evaluation of existing cultivar/rootstock combinations for HLB resistance/tolerance has revealed potentially valuable tolerance but indicates that early HLB symptoms and earlier CLas titer are unrelated to growth and cropping. This suggests that tolerance verification requires 5+ years of field evaluation. Discovery and utilization of molecular markers may help to accelerate the selection of resistance/tolerance materials by screening young plants and avoiding pathogen inoculation. Plant defense elicited by pathogen-associated molecular patterns (PAMPs) is an important component of disease resistance. In previous studies, we have shown that canker resistance in citrus correlates with responsiveness to Xcc-flg22, the 22 amino acid active region from the flagellin of Xanthomonas citri ssp. citri, the causal agent of citrus canker (Shi, Febres et al. 2015). To study the association between HLB resistance/tolerance and citrus response to flg22 of HLB causal bacterium Candidatus Liberibacter asiaticus (CLas), we designed an RNA-seq experiment comparing transcriptome responses in HLB moderately tolerant Sun Chu Sha mandarin and susceptible Duncan grapefruit, to Xcc-flg22 and CLas-flg22 (project initiated with Gloria Moore at University of Florida). Recently data analysis revealed that a group of 86 genes were differentially regulated by CLas-flg22 in Sun Chu Sha mandarin but not by Duncan grapefruit and not associated with differential expression from Xcc-flg22, suggesting they may have roles in HLB tolerance. The 16 genes with highest differential expression were selected for RT-qPCR validation, and 10 genes were consistent with the RNA-seq results. To evaluate if these genes were associated with HLB tolerance, Cleopatra mandarin (similar to Sun Chu Sha ) and Duncan grapefruit plants were inoculated with CLas using psyllid infestation. CLas titer and gene expression were monitored biweekly for 10 weeks after inoculation. High bacterial titer (Ct<30) was observed at 2 weeks in Duncan but not until 6 weeks in Cleopatra . RT-qPCR results indicated that 5 of the studied genes were differentially expressed between the Cleopatra HLB-infected and the uninfected control plants, but not in Duncan . It is worth noting that the induction of these genes was detected before bacterial infection was detected. Although not fully annotated in the citrus genomic databases, the function of some of these genes include a peroxidase, gibberellin 2-beta-dioxygenase, glucan endo-1,3-beta-D-glucosidase and an F-box domain containing protein. We will continue to characterize the expression of these genes and their association to HLB tolerance in other citrus genotypes, and determine if they may serve as marker genes for selection of tolerant citrus material. Trees of seemingly HLB resistant/tolerant sweet orange-like hybrids and mandarin -types were propagated and replicated trials with standards and have been established in growers' fields, in cooperation with G. McCollum. A mapping population of Fortune x Fairchild has been planted (collaborating Roose and Gmitter) along with related material, in an effort to identify genes associated with tolerance in the mandarin phenotypic group. Seedlings with a range of pedigree contributions from Microcitrus have been received in a collaboration with M. Smith, Queensland Aus. citrus breeder, are being grown, and will be planted in the spring for field testing of HLB resistance. In October 2013, 34 unique genotypes (USDA hybrids) some of which appear to have tolerance to HLB, and 16 standard commercial varieties were exposed to an ACP no-choice feeding trial and transferred to the field at Ft. Pierce FL. Standard growth measurements and disease ratings were initiated in July 2014 and will continue on a quarterly basis. HLB is now widespread and trees of more vigorous scion types are generally the healthiest at this point in time. At three years after planting, there continues to be great variation between selections and it may take 2-3 more years to clearly distinguish tolerant material.



Implementing Transgenic Tools to Produce Commercial Scion Cultivars Resistant to HLB and Canker

Report Date: 01/09/2017   Project: 15-026   Year: 2016

Implementing Transgenic Tools to Produce Commercial Scion Cultivars Resistant to HLB and Canker

Report Date: 01/09/2017
Project: 15-026   Year: 2016
Category: Horticultural & Management
Author: Ed Stover
Sponsor: Citrus Research and Development Foundation

Transgenic evaluation of antimicrobial peptides (AMPs) has so far has identified a modified thionin (Mthionin) that conferred resistance against HLB and canker when over-expressed in Carrizo plants (Hao et al, 2016 Front Plant Sci.). From the same transgenic Carrizo population, we screened another 37 positive plants by PCR validation of gene insertion and documented Mthionin transcript level of each plant by RT-qPCR. Multiple high, intermediate and low transgene expressing plants were selected and propagated using stem cuttings (a total of 250 cuttings). Once established these plants will be tested as rootstocks with sweet orange and grapefruit scions. compared with wild type Carrizo as a rootstock. An antibody has been developed for specific detection of Mthionin and a second to detect both Mthionin and citrus native thionin. Currently, we are evaluating binding capacity and sensitivity of these antibodies to antigen peptides and to full-length proteins (expressed by E.Coli). Later the antibodies will be used for access expression level and mobility of thionin protein between root stock and scion. Two additional Mthionin chimera genes (2nd generation of AMPs), Mthionin-D2A21 and Mthionin-lipid binding protein (LBP), have been used to produce transgenic Carrizo and Hamlin. So far we have obtained a number of transgenic Carrizo plants and made a propagation of about 100 for each transgene. These plants will be used for initial evaluation of HLB resistance through no choice ACP feeding inoculation and promising lines will be further propagated for field tests. The 3rd generation of AMPs includes two variants of modified citrus thionin genes combined with citrus LBP. Transformation of these two chimeras into Carrizo and Hamlin is underway. So far we have obtained a number of Carrizo regenerations. We are also in the process of the evaluation of HLB resistance in several Hamlin transgenic lines: we graft propagated transgenic Hamlin expressing Mthionin, D4E1 linker Mthionin, and LuxI, with wild type scion as the controls. These plants are established and inoculated by no choice feeding from 9 to 12 month ago. The bacterial titer tests showed that only very few plants were HLB positive, indicating the inoculation procedure was not successful. These plants were uniformly trimmed for new flush growth and will soon be re-inoculated with our improved protocols. The previous generations of transgenics remain in testing in the greenhouse and field.



Continued funding for the mature citrus facility to produce disease tolerant, transgenic citrus

Report Date: 12/23/2016   Project: 15-045C   Year: 2016

Continued funding for the mature citrus facility to produce disease tolerant, transgenic citrus

Report Date: 12/23/2016
Project: 15-045C   Year: 2016
Category: Horticultural & Management
Author: Janice Zale
Sponsor: Citrus Research and Development Foundation

Our productivity significantly decreased after the move to the packing house while the AC in our lab was being fixed. There was bacterial contamination of our cultures, presumably due to autoclave issues, unsealed windows, or poor temperature control. Bacterial and fungal clean tests of mature citrus budwood from the growth facility in LB & LW broth, respectively, showed that all mother trees were clean, even the new cultivar introductions (B770, OLL8, Vernia, red grapefruit). We anticipate having to do two Agrobacterium transformations per week to make-up for lost time. Needless to say our efficiencies declined because of the move. Due to the aforementioned difficulties, Agrobacterium transformations with disease resistant genes was slowed. Only ~10 transgenics were produced and one did not survive micrografting. The results of the remainder are pending. Ten immature Swingle transgenics for Dr. Wang and Vladimir were micrografted because Vladimir had micrografting issues in the packing house. One shoot died & the results for the others are pending. We have found a cDNA that dramatically increases our mature scion transformation efficiencies and we are investigating whether it will increase efficiencies in all cultivars. An invention disclosure entitled, A method to increase organogenesis and transformation efficiencies in recalcitrant woody species such as mature citrus, was submitted to UF/IFAS Tech Transfer. There have been significant unanticipated growth room repair & maintenance expenditures during this last quarter. The water softener had to be rebuilt & a new one must be purchased next fiscal year. Without the water softener, hard water clogs the humidifiers & a white residue is deposited on plants making them unsuitable for transformation. The AC ducts in both growth rooms must be replaced because of filth deposited inside them over the years. The sprayer broke down & was repaired again. In the future, a new sprayer must be purchased to alleviate costly repairs. Lights & ballasts are an ongoing significant expenditure. We had to replace some of the shelving in the laboratory because our shelving disappeared after the move. The use of the PMI selectable marker after biolistics of immature and mature citrus continues. Different sucrose concentrations are required for shoot regeneration in mature vs immature citrus. Similarly, more sucrose is necessary for shoot development in scion than rootstock. Mannose concentrations must be manipulated accordingly. A manuscript (25% funded CRDF & 75% funded CRB) was submitted to PCTOC & is in review: Y. Acanda, M. Canton, H. Wu and J. Zale (XXXX) Kanamycin selection in bioreactors allows visual selection of transgenic citrus shoots, PCTOC.



Development and Commercialization of Improved New Disease Resistant Scions and Rootstocks - the Key For a Sustainable and Profitable Florida Citrus Industry

Report Date: 12/12/2016   Project: 15-010   Year: 2016

Development and Commercialization of Improved New Disease Resistant Scions and Rootstocks - the Key For a Sustainable and Profitable Florida Citrus Industry

Report Date: 12/12/2016
Project: 15-010   Year: 2016
Category: Plant Improvement
Author: Fred Gmitter
Sponsor: Citrus Research and Development Foundation

Our project is focused on the following objectives: 1. Development of rootstocks that can impart HLB tolerance/resistance to grafted scions. 2. Breeding of HLB tolerant/resistant processing sweet orange-like hybrids. 3. Screening of the UF-CREC germplasm collection to identify and validate HLB tolerant or resistant selections. 4. Advanced field trials, release and commercialization of promising HLB tolerant/resistant scion and rootstock cultivars. DPI Parent Tree Entries: Three gauntlet rootstock selections, plus two others already showing evidence of HLB tolerance in field trials. Several scions selections, submitted primarily because of high levels of tolerance to HLB in the field, including Cybrid Dancy (reduced seed); 1 Red pummelo, 1 nearly seedless pink pummelo, and seedless Pummelette ; 3 seedless mandarins; the so-called McTeer Murcott (low seeded and showing HLB tolerance under heavy field pressure); a late maturing true sweet orange exhibiting HLB tolerance in multiple replicates; two HLB tolerant sweet orange-like hybrids; one seedy but extremely high quality mandarin. Gauntlet activities: Several new candidates have been entered into the program, grafted with hot budsticks and their tops propagated. Seventy five candidates were moved from the greenhouse to a psyllid hot house, and another 145 trees were planted in Picos Farm for final field screening, in collaboration with USDA researchers. Transgenic plantings: 198 sweet orange trees and 27 W. Murcott trees, containing a total of 7 different constructs for possible resistance to HLB, were also planted at Picos Farm in collaboration with USDA researchers. Field trials: Meetings were held with our collaborators from Lykes and Cutrale Citrus to review plans and activities in large scale field trials with these companies. Replacement trees were replanted, and seeds for a large trial with Hamlin orange were collected and transferred to the relevant nurseries. Other activities: Meetings were held with CRDF staff to facilitate communications and mutual understanding of our current research agenda. Several interactions took place of our team with recently hired Dr. Catherine Hatcher of CRDF. We have made several field visits to some of our locations in an effort to help her understand the nature and landscape of our citrus breeding program. We feel we have established a good working relationship and anticipate that this will facilitate the more rapid deployment of potential genetic solutions to HLB in the industry. Our field research manager, Dr. Paul Ling, resigned during this time frame and we have begun a search for his replacement. Several meetings and teleconferences were held with collaborators from the USDA, UCR, DPI, and Rucks Nursery to develop and implement plans for two MAC projects aiming to plant several large scale trials in Florida of tolerant rootstock and scion cultivars.



Understanding and Manipulating the Interaction of Rootstocks and Constant Nutrition to Enhance the Establishment, Longevity and Profitability of Citrus Plantings in HLB-Endemic Areas

Report Date: 11/21/2016   Project: 15-013   Year: 2016

Understanding and Manipulating the Interaction of Rootstocks and Constant Nutrition to Enhance the Establishment, Longevity and Profitability of Citrus Plantings in HLB-Endemic Areas

Report Date: 11/21/2016
Project: 15-013   Year: 2016
Category: Plant Improvement
Author: Jude Grosser
Sponsor: Citrus Research and Development Foundation

Objective 1. (Greenhouse experiment): seedlings of the required rootstocks: x639, Swingle, WGFT+50-7, UFR-3 and UFR-15 potted in round citripots were trained to a single stem for subsequent stick grafting (in our HLB approved air-conditioned greenhouse). Liners are now stick-grafting size, grafting will begin in February, when conditions support a good graft-take. Objective III: To evaluate the effect of complete, balanced and constant nutrition on HLB-affected mature trees (composition, delivery and economics). All the pretreatment and mid-year data on tree health, canopy volume, leaf nutrients analysis has been collected and is currently being analyzed. We have applied the fertilizer for year 1 at both the locations. The trees have received full dosage of fertilizer for macro and micronutrients. Data collection on fruit drop has started at both locations. Next fertilizer application will be made in February. April is anticipated harvest time. Ojective 5. (funded by Orie Lee, using donated fertilizer products): Alligator Vernia/Rough Lemon Enhanced Nutrition Experiment Treatments: 6 tree plots (randomized), 2 plots per treatment treatments 2 times per year. The third treatment was applied as follows (using all donated products from TigerSul, Harrell’s and Florikan). Permanent field plot signs were installed (w/ assistance from Frank Rogers). 1. Control no extra nutrition 2. Harrells St. Helena mix (2lbs per tree) 3. Harrells St. Helena mix (2lbs.)+ 2x TigerSul manganese (90 gm) 4. Harrells St. Helena mix (2lbs.) + 2x Florikan polycoated sodium borate (32 gm) 5. Harrells St. Helena mix (2lbs.) + 2x TigerSul manganese (90 gm) + 2x FL sodium borate (32 gm) 6. 4x TigerSul manganese (180 gm) 7. 4x Florikan polycoated sodium borate (64 gm) 8. 4xTigerSul manganese (180 gm) + 4x Florikan polycoated sodium borate (64 gm) Donated micronutrient treatments were also applied at the Hughes Post Office block (Haines City) – where there were yield increases ranging from a half-box to 3/4’s box per tree this past season on 100% HLB-infected trees, enhanced by specific treatments, especially those containing both boron and manganese. Trees look exceptional at present, and we expect to see a yield increase for the 2nd year in a row since we began the study.