Plant Improvement


Examination of poncirus genes for tolerance of sweet orange to HLB

Report Date: 08/25/2014   Project: 518

Examination of poncirus genes for tolerance of sweet orange to HLB

Report Date: 08/25/2014
Project: 518
Category: Plant Improvement
Author: William Dawson
Sponsor: Citrus Research and Development Foundation

This is a joint project between CREC and USDA, Fort Pierce. The objective of this project was to find poncirus hybrids that exist now that are sufficiently tolerant and of sufficient horticultural and juice quality to be used now for new planting in the presence of high levels of Huanglongbing (HLB) inoculum. We believe there is a good chance that there mature budwood exists with these properties that could be available immediately for new plantings. Although these trees are not likely to be equal in juice and horticultural qualities of the susceptible varieties of sweet oranges grown in Florida, with their tolerance to HLB they could be an acceptable crutch until better trees are developed. We surveyed the trees at the Whitney field station and found 7 lines that we thought could be acceptable for fruit or juice. Those have been propagated and are being screened for tolerance and horticultural properties. Each of the hybrids has been propagated onto four rootstocks (US 812, US 942, Swingle, and Sour Orange) with multiple replicates of each rootstock scion combination. These trees are ready for secondary evaluation. A second set of the hybrids was propagated from the first set onto Kuharski rootstock, there are 16 replicates of each scion hybrid and the trees will soon be ready for filed evaluation.T he hybrid plants are being incubated in the psyllid containment room to allow multiple psyllids to inoculate the plants with HLB. All of the plants are tolerant to CLas. We resurveyed the trees at the Whitney field station. Most of the hybrids are HLB infected but have only minor symptoms. The fruit on the chosen trees were again considered to have acceptable fruit taste. Most of the chosen trees which lacked HLB symptoms were found to contain the HLB bacterium. These plants, which contain 1/8 poncirus, are tolerant to HLB and have acceptable taste. At the very least, these plants should be acceptable for back-yard trees, which would allow home owners to have citrus fruit trees in the presence of HLB.



Characterization of Huanglongbing (HLB) survivors in the severely infected and/or abandoned groves

Report Date: 08/15/2014   Project: 537-1   Year: 2014

Characterization of Huanglongbing (HLB) survivors in the severely infected and/or abandoned groves

Report Date: 08/15/2014
Project: 537-1   Year: 2014
Category: Plant Improvement
Author: Fred Gmitter
Sponsor: Citrus Research and Development Foundation

The original goals this project addressed were to identify, propagate and test rootstock and/or scion HLB survivors, identified in the filed in Florida. The one year enhancement funding was to facilitate the project and to expand the information base of surviving trees. This was specifically focused on DNA marker fingerprinting using SSRs (simple sequence repeats) to assess trueness to type, particularly of the rootstocks. As a consequence, additional work in the labs and the greenhouses was conducted, and appropriate personnel worked on the project to provide the additional information promised in the enhancement request for funding. Methods were developed and refined for routine extraction of DNA and fingerprint analysis from feeder roots collected from beneath the survivor trees; this critical aspect was not a component of the original project proposal, but is providing helpful new information, to help determine whether the performance of these trees is based on rootstock variations. We have continued to monitor previously identified candidate survivor trees at the CREC, the GCREC, and some Polk County commercial groves where we have planted out materials from the CREC breeding program. Most of the trees now have begun to display symptoms after more than 24 months of observation, though there remain a few still unaffected as of June 2014. Trees at an abandoned location in Palm Beach County, that retain reasonably good condition and freedom from obvious symptoms, were sampled for both budwood and root tissues. Budwood samples were propagated onto healthy rootstock seedlings at the CREC. In addition, root samples were provided. We were able to collect root sprouts from some of the trees that were decapitated; we have propagated from these root sprouts, by budding and by rooted cuttings. These small trees are growing of for further propagations to test their responses to HLB. We extracted DNA from these sprouts and compared their DNA fingerprints with what we produced from feeder roots collected previously, as expected, the fingerprints were identical. New rootstock samples collected from trees were used to confirm nucellar embryony. Thus far, all except one of the rootstocks collected has been shown to be a nucellar seedling of the presumed rootstock. Routine fingerprinting of all scion varieties sampled has shown them all to be true to type; this does not discount the possibility of mutations for HLB tolerance/resistance. We have likewise collected feeder root samples from various survivor trees in other locations for fingerprinting. We have gathered information on many other possible survivors identified and in most cases it was decided to allow more time to determine whether the these trees warranted more careful analysis because they generally represented quite a few trees in each location. In other instances, the reported survivors actually exhibited more symptoms than would qualify as a ‘healthy’ survivor. New reports of survivors have come in from Highlands, Lee, Collier, Indian River, Lake, and Marion Counties; several have been documented, and some have been visited by the PI or extension personnel. In some cases, samples have been collected for propagation and further testing. In other cases, materials have not yet been collected, pending further assessment of disease expression in the autumn and winter seasons.



Functional disruption of the NodT outer membrane protein of Candidatus Liberibacter asiaticus for rootstock-mediated resistance to citrus greening using a phloem-directed, single-chain antibody

Report Date: 08/11/2014   Project: 424

Functional disruption of the NodT outer membrane protein of Candidatus Liberibacter asiaticus for rootstock-mediated resistance to citrus greening using a phloem-directed, single-chain antibody

Report Date: 08/11/2014
Project: 424
Category: Horticultural & Management
Author: Timothy McNellis
Sponsor: Citrus Research and Development Foundation

Transformations of citrus plants with the FLT-antiNodT fusion protein expression construct have been completed at the Citrus Transformation Facility at the University of Florida Citrus Research and Education Center at Lake Alfred, FL. The FLT-antiNodT expression cassette has been introduced into ‘Duncan’ grapefruit by Agrobacterium tumefaciens – mediated transformation. Fifteen (15) independent transformant lines resistant to the kanamycin selection marker and expressing the green fluorescent protein have been regenerated successfully into plantlets. Of these 15 lines, 10 are strong expresses of the green fluorescent protein (GFP) transgenic marker, indicating successful transformation and expression of the transgenic marker genes. The other 5 show spotty expression of the GFP in cells of all tissues examined. This could indicate gene silencing might be affecting GFP expression in these plants. The effect that this might have on FLT-antiNodT fusion protein expression are not known, but will be tested later. The plantlets range from 5 – 15 cm in height, with the smaller plants being younger than the larger plants. All of the 15 lines appear to be growing and developing normally, which is a good sign that the FLT-antiNodT fusion protein is not having any unexpected deleterious effects on the plants. Permits to move the plants from Florida to Pennsylvania have been obtained, in order to study the FLT-antiNodT fusion protein expression levels and phloem-localization of the FLT-antiNodT fusion protein. Plans are being made to test the HLB resistance of these transgenic lines in collaboration with Dr. Tim Gottwald at the USDA Horticultural Research Lab at Ft. Pierce, FL.



Application of a natural inducer of systemic acquired resistance and engineering non-host resistance in citrus for controlling citrus diseases

Report Date: 08/11/2014   Project: 754   Year: 2014

Application of a natural inducer of systemic acquired resistance and engineering non-host resistance in citrus for controlling citrus diseases

Report Date: 08/11/2014
Project: 754   Year: 2014
Category: Horticultural & Management
Author: Zhonglin Mou
Sponsor: Citrus Research and Development Foundation

The project has two objectives: (1) Increase citrus disease resistance by activating the NAD+-mediated defense-signaling pathway. (2) Engineer non-host resistance in citrus to control citrus canker and HLB. For objective 1, we have been preparing citrus plants for root treatment with NAD+. We are testing NAD+ analogs to identify potential chemicals for citrus disease control. For objective 2, about 15 more transgenic lines have been generated. We are currently characterize the transgenic seedlings. For the 20 transgenic lines generated previously, we have confirmed 15 of them containing the transgene. Expression of the transgenes have also been tested. These plants are growing in the greenhouse and will be tested for canker resistance. We are cloning the citrus homologs and will confirm the sequences of the genes before transformation.



Understanding and Manipulating the Interaction of Complex Rootstock Genetics and Constant Nutrition to Enhance the Establishment, Longevity and Profitability of New Citrus Plantings in HLB-Endemic Areas

Report Date: 08/06/2014   Project: 548-1   Year: 2014

Understanding and Manipulating the Interaction of Complex Rootstock Genetics and Constant Nutrition to Enhance the Establishment, Longevity and Profitability of New Citrus Plantings in HLB-Endemic Areas

Report Date: 08/06/2014
Project: 548-1   Year: 2014
Category: Plant Improvement
Author: Jude Grosser
Sponsor: Citrus Research and Development Foundation

The topworking project was completed in mid-July. Trees with all failed grafts were re-grafted in early July, and the trees were cut to promote growth from new buds in late July. Approximately 275 trees were successfully topworked with 19 high quality scions showing potentially enhanced HLB tolerance, including 15 sweet orange clones, one triploid sweet orange-like hybrid and 3 red grapefruit clones. Successfully grafted trees are growing well and showing good health (no HLB symptoms at present, even though trees were topworked onto HLB-infected Hamlin scion and Carrizo rootstock). Controlled release fertilizer (Harrell’s UF mix combined with TigurSul micros iron, zinc and manganese) was purchased and applied to the trees in mid-July. This will carry the trees through to January. Trees will be monitored for HLB symptoms, and later by PCR analysis. Any scions showing enhanced HLB tolerance will of course be made available to the Florida citrus industry as quickly as possible.



Engineering PAMP-receptor mediated broad spectrum resistance to HLB and canker

Report Date: 08/06/2014   Project: 556   Year: 2014

Engineering PAMP-receptor mediated broad spectrum resistance to HLB and canker

Report Date: 08/06/2014
Project: 556   Year: 2014
Category: Horticultural & Management
Author: Diana Horvath
Sponsor: Citrus Research and Development Foundation

Objective 1: Generate functional EFR variants (EFR+) recognizing both elf18-Xac and elf18-CLas. From the screening of random mutants which had previously been performed, it became clear that we needed to screen a larger number of mutant clones to find recognition of elf18-CLas. In order to perform screening on complex EFR mutant libraries required to discover mutants which respond to elf18-CLas we have been developing a FACS based screen. To this end we have generated a number of reporter lines in both suspension cultures and transgenic Arabidopsis plants. The reporter lines are driven by the FRK1, WRKY30 and PER4 promoters. We have tested two PER4 cell suspension lines for responsiveness to elf18 and both of these give clear induction of the reporter gene following treatment. We will also test the WRKY30 and FRK1 cell suspension lines once the liquid cultures are established. In addition we have generated transgenic plants with these reporter constructs and are currently waiting to collect seed from primary transformants. We plan to test the activity of the pPER4:GFP cell suspension lines following protoplast transformation to ensure that the reporter is not activated during. If these tests are clear then we will proceed to FACS screen of mutant EFR libraries. In addition to the mutagenesis approach we are currently setting up to screen the Nordborg collection of Arabidopsis ecotypes for sensitivity to elf18-CLas or reciprocal chimeric peptides of elf18-Ecoli and elf18-CLas, in order to determine whether a natural variant of EFR capable of binding elf18-CLas can be isolated. Objective 2. Generate functional XA21-EFR chimera (XA21-EFRchim) recognizing axYS22-Xac. These constructs have been constructed and tested and a manuscript is under revision. Objective 3: Generate transgenic citrus plants expressing both EFR+ and XA21-EFRchim. Constructs containing EFR alone or in combination with XA21 or XA21-EFR were provided to the Moore lab, and epicotyl transformation experiments are ongoing (May to July 2014). To date a total of 2,945 ‘Duncan’ grapefruit and 879 sweet orange epicotyl segments have been collectively transformed with the constructs EFR, EFR-XA21, EFR-XA21-EFRchim and pCAMBIA2201 (empty vector control). Preliminary GUS histochemical assays were carried out on 6 sweet orange shoots regenerated from transformation experiments with EFR, EFR-XA21 and EFR-XA21-EFRchim. Results indicate that no GUS positive shoots were obtained, however 1 shoot from the EFR-XA21-EFRchim construct was chimeric for GUS.



Manipulating defense signaling networks to stimulate broad-spectrum resistance to HLB and other diseases in citrus

Report Date: 08/03/2014   Project: 566   Year: 2014

Manipulating defense signaling networks to stimulate broad-spectrum resistance to HLB and other diseases in citrus

Report Date: 08/03/2014
Project: 566   Year: 2014
Category: Horticultural & Management
Author: Hua Lu
Sponsor: Citrus Research and Development Foundation

We aim in this project to genetically manipulate defense signaling networks to produce citrus cultivars with enhanced disease resistance. Defense signaling networks have been well elucidated in the model plant Arabidopsis but not yet in citrus. Salicylic acid (SA), jasmonic acid (JA) and ethylene (ET) are key hubs on the defense networks and are known to regulate broad-spectrum disease resistance. With a previous CRDF support, the PI’s laboratory has identified ten citrus genes with potential roles as positive SA regulators. Characterization of these genes indicate that Arabidopsis can be used not only as an excellent reference to guide the discovery of citrus defense genes and but also as a powerful tool to test function of citrus genes. This new project will significantly expand the scope of defense genes to be studied by examining the roles of negative SA regulators and genes affecting JA and ET-mediated pathways in regulating citrus defense. We have three specific objectives in this proposal: 1) identify SA negative regulators and genes affecting JA- and ET-mediated defense in citrus; 2) test function of citrus genes for their disease resistance by overexpression in Arabidopsis; and 3) produce and evaluate transgenic citrus with altered expression of defense genes for resistance to HLB and other diseases. We reported cloning six new full-length cDNAs of different citrus genes into the entry vector last quarter. Now we have moved five of these clones into the binary vector pBINplusARS. Citrus transformation with these five clones shall be initiated shortly. In addition, a seventh new full-length cDNA was obtained in the entry vector for further DNA construction followed by plant transformation. In addition, we continue to characterize transgenic citrus plants expressing the SA positive regulators, as proposed in the previous project (#129), although the support of the project has already been terminated.



TAL Effector induced resistance to Xanthomonas

Report Date: 07/25/2014   Project: 555   Year: 2014

TAL Effector induced resistance to Xanthomonas

Report Date: 07/25/2014
Project: 555   Year: 2014
Category: Horticultural & Management
Author: Diana Horvath
Sponsor: Citrus Research and Development Foundation

This quarter we have continued to make progress on our transformation approaches: 1. Stable transformation in citrus using new vectors. We previously found that the original vector system used to create the Bs3 promoter constructs was contributing to low transformation efficiency in citrus, and switched to a pCAMBIA-based vector system. Two ProBs314EBE:avrGf2 transgenic plants created using the new vectors in citrus cultivar Carrizo have now been confirmed by PCR to contain the transgene, and these will be examined for appropriate gene expression by RT-PCR. An ongoing pipeline of transformants are being generated with the new vectors. To date a total of 2,056 putative transgenic shoots of grapefruit, sweet orange and Carrizo were screened for this period. Results show that no GUS positive has been observed for the sweet orange cultivar transformed with any of the constructs analyzed, however, 3 shoots were chimeric for the pCAMBIA2201:NosT:Bs3super::avrGF2 construct. In general, grapefruit had a combined total of 12 and 41 shoots being GUS positive and chimeric for GUS, respectively for all constructs anlayzed while Carrizo citrange had 185 and 180 shoots being GUS positive and chimeric for GUS, respectively. These GUS and chimeric shoots will later be screened via PCR once rooted and transferred to soil for acclimatization. 2. Stable transformation in tomato test system: A tomato test system was previously designed and tested in which the 14 EBE promoter was fused to the avrBs4 gene capable of inducing a hypersensitive reaction in tomato. T1 generation of Bonny Best and Large Red Cherry transformed with ProBs3_14EBE:avrBs4 were screened for pathogenicity reaction with X. euvesicatoria strain (Race 9). Promising resistant transgenics have been selected for T2 generation analysis to confirm that this test system, in which resistance is induced by the effectors AvrBs3 and AvrHah1, is functional for conferring stably-transformed transgenic disease resistance.



Use of an early flowering gene in citrus to rapidly transfer disease resistance from citrus relatives into cultivated types

Report Date: 07/24/2014   Project: 573   Year: 2014

Use of an early flowering gene in citrus to rapidly transfer disease resistance from citrus relatives into cultivated types

Report Date: 07/24/2014
Project: 573   Year: 2014
Category: Horticultural & Management
Author: Gloria Moore
Sponsor: Citrus Research and Development Foundation

The one year study of the in vivo tracking of FT1, FT2, and FT3 in various citrus trees differing in age and phenotype is concluded and is being analyzed. A study of CiFT3 transgenic plants treated with various growth regulators has been performed and all of the data have been collected except for the flowering dates of the nontransgenic control plants that have not yet flowered (they should soon). The growth hormones produced striking and individually different phenotypes in each treatment. The endogenous ciFT3 promoter was successfully cloned to be used in the transcription activator-like (TAL) effector system inducible by methoxyfenozide that will hopefully activate the naturally present FT3 gene in citrus. The complete construct is completed and is being tested in tobacco for a rapid test before citrus experiments are started. This research will be presented at the upcoming ASHS national meeting.



Citrus Genetic Improvement Using Cell-Penetrating Peptides

Report Date: 07/24/2014   Project: 752   Year: 2014

Citrus Genetic Improvement Using Cell-Penetrating Peptides

Report Date: 07/24/2014
Project: 752   Year: 2014
Category: Plant Improvement
Author: Gloria Moore
Sponsor: Citrus Research and Development Foundation

Work on obtaining stable genetic transformation using cell penetrating peptides has not been successful in citrus thus far, using methods that have been successful in at least one other plant species, although that species was a monocot not amenable to Agrobacterium transformation and microspore tissue, different from what we can use, was inoculated. The difficulty in citrus is, not surprisingly, difficulty with getting integration of DNA species into the citrus chromosomes. We are continuing to work on this and very new methods of achieving integration have been developed in other species that we are evaluating. We are having more success with developing a robust transient expression system in citrus with the CPPs. We have shown that we can get locally transient expression of genes and proteins in explants. We are now working with whole plants and other methodology that may allow cargo to move throughout the plant. Finally, we continue our collaboration with the scientists that are working with polymer nanoparticles.



Screening and Cloning of Resistance Related Genes by RNA-Seq in Huanglongbing (HLB) Resistant and Susceptible Citrus Breeding Lines

Report Date: 07/22/2014   Project: 523   Year: 2014

Screening and Cloning of Resistance Related Genes by RNA-Seq in Huanglongbing (HLB) Resistant and Susceptible Citrus Breeding Lines

Report Date: 07/22/2014
Project: 523   Year: 2014
Category: Plant Improvement
Author: Yong-Ping Duan
Sponsor: Citrus Research and Development Foundation

The objectives of this project are: 1) to generate transcriptome profiles of both susceptible and resistant citrus responding to HLB infection using RNA-Seq technology; 2) to identify key resistant genes from differentially expressed genes and gene clusters between the HLB-susceptible and HLB-resistant plants via intensive bioinformatics and other experimental verifications; and 3) to create transgenic citrus cultivars with new constructs containing the resistant genes. A total of 25 samples for RNA-Seq, including resistant/tolerant vs. susceptible plants were sequenced and analyzed. We mapped the RNA-Seq data to a reference genome, C. clementina using the bioinformatics program STAR. About 85% of the raw reads could be uniquely mapped. The transfrags of each library were assembled with cufflinks and merged with cuffmerg. 24,275 genes of the originally predicted genes had been found to be expressed and a total of 10,539 novel transfrags were identified with cufflinks, which were missing from the original reference genome annotation. Some of the NBS genes were found to be expressed. For C. clementine and C. sinensis, there were 118,381 and 214,858 mRNAs or ESTs deposited in GenBank and 93 out of 607 and 221 out of 484 NBS related genes match one or more ESTs respectively. The number of ESTs varied from 1 to 25. The expression abundance of each gene was measured by FPKM. The distribution curves of density of FPKM of 5 samples are very similar, indicating that the gene expression is similar and the quality of sequencing is high. We also performed the principal component (PC) analysis study on the expressions of five samples. The results showed that the gene expressions were significantly different in resistant vs. susceptible citrus. Using cuffdiff, a total of 821 genes were identified as difference expressed genes (DE genes) between the two groups using both p-value and an FDR threshold of 0.01. Among them, 306 genes are up-regulated and 515 are down-regulated in resistant citrus. Using the program iAssembler, a total of 53,981 uni-transfrags were obtained. Most of the assembled uni-transfrags should be novel genes, compared with the citrus reference genome. We further identified 3073 DE genes by comparing the gene expression of another group of resistant and sensitive citrus samples using DESeq2 with adjusted P-value (padj) < 0.1. Among these DE genes, 1413 genes were up-regulated in resistant citrus significantly and 1660 genes were down-regulated in resistant citrus. Due to our comparing strategy, the DE genes should most come from the difference between Marsh and Jackson. As all of the 3 resistant citrus came from the offsprings of Jackson and all of the sensitive citrus trees came from that of Marsh. The resistance genes should come from Jackson. A total of 86 DE genes were identified in the tolerant and intolerant citrus group using DESeq2 with adjusted p-value less than 0.01. Among these DE genes, 69 genes were up-regulated and 17 genes were down-regulated in the tolerant samples. We selected top 50 different expressed genes from the up-regulated and down-regulated genes each for the further validation. There are some differences at the isoforms level between the resistant and sensitive samples. Although 205 out of 221 of the different expressed isoforms consist with the expression pattern at gene level, there are 16 different expressed isoforms don't consist at the gene level. For an example, isoform TCONS_00090333, a RING finger and transmembrane domain-containing protein 2, significantly down-regulated in the resistant citrus samples (log2 = -7.17), but the corresponding gene XLOC_025451 have no significantly change between resistant and sensitive citrus samples. We are validating the different expressed genes /isoforms identified by deep sequencing at both gene and isoform levels using RT-PCR, and are making constructs of a few selected genes for citrus transformation.



Molecular basis of Citrus Greening and related diseases gleaned from genome analyses of hosts and pathogens

Report Date: 07/15/2014   Project: 733   Year: 2014

Molecular basis of Citrus Greening and related diseases gleaned from genome analyses of hosts and pathogens

Report Date: 07/15/2014
Project: 733   Year: 2014
Category: Plant Improvement
Author: Nick Grishin
Sponsor: Citrus Research and Development Foundation

During the last period we concentrated on the comparative analysis of Liberibacter methabolic enzymes with the goal to find out those present in pathogenic species but absent in a non-pathogen. Two of the identified pathogen-specific genes that are not in the prophage region encode proteins that function in the terpenoid biosynthetic pathway: CLIBASIA_04600 encodes a mevalonate kinase, and CLIBASIA_05065 encodes a geranyltranstransferase. Our initial sequence comparison cutoffs did not detect the Las mevalonate kinase as having an ortholog in L. crescens. However, L. crescens does contain this enzyme fused to the 3-hydroxy-3-methylglutaryl CoA synthase enzyme serving as the first step in the mevalonate pathway (bifunctional enzyme fusion B488_07240). Thus, all of the Liberibacter genomes include the required enzymes of the mevalonate pathway to produce isopentenyl pyrophosphate (IPP). However, only the pathogenic strains possess a geranyltranstransferase capable of elongating the IPP chain. The products of the geranyltransferase enzyme (geranyl-PP and farnesyl-PP) provide the building blocks for monoterpenoid biosynthesis, which is specific to plants) and steroid biosynthesis (mainly in eukaryotes), respectively (from KEGG pathways). For example, the plant terpine limonene that is responsible for the strong smell of oranges and other citrus is formed from cyclization of geranyl-PP. The steroid biosynthetic pathway from farnesyl-PP in plants generates the hormone brassinosteroid as well as other phytosteroids. Modification of this plant metabolic pathway by the pathogens might contribute to pathogenesis.



Production of Transgenic Commercial Scion Cultivars Resistant to HLB and Canker: Continued AMP Approaches and Novel Transgenic Strategies

Report Date: 07/15/2014   Project: 606   Year: 2014

Production of Transgenic Commercial Scion Cultivars Resistant to HLB and Canker: Continued AMP Approaches and Novel Transgenic Strategies

Report Date: 07/15/2014
Project: 606   Year: 2014
Category: Horticultural & Management
Author: Ed Stover
Sponsor: Citrus Research and Development Foundation

Putative transgenic plants of PP-2 hairpins (for suppression of PP-2 through RNAi to test possible reduction in vascular blockage even when CLas is present) and of PP-2 directly are grafted in the greenhouse and growing for transgene verification, replication and testing. 40 putative transgenic plants transformed with citGRP1 were tested by PCR and twenty two of them were confirmed with citGRP1 insertion. RNA was isolated from some and RT-PCR showed gene expression. Some transgenics with over-expression of citGRP1 increased resistance to canker by detached leaf assay and infiltration with Xanthomonas. About 10 transgenic Hamlin shoots with citGRP2 were rooted in the medium and nine of them were planted in soil. Over 60 transgenic Carrizo with GRP2 were transferred to soil. DNA was isolated from 20 of them and 19 of them are PCR positive. Some of them showed canker resistance when infiltrated with Xcc at concentration of 105/CFU. Belknap reports that potatoes transformed with citGRP2 are displaying considerable resistance to Zebra Chip in Washington state. Fifteen transgenic Carrizo and seven transgenic Hamlin with peach dormancy related gene MADS6 were planted in soil and they are ready for DNA isolation. A chimeral construct that should enhance AMP effectiveness (designed by Goutam Gupta of Los Alamos National Lab) is being tested. Many transformed Carrizo with the chimera AMP was obtained. DNA was isolated from 32 of them and PCR test confirmed 28 are positive. Canker test showed two of them greatly increased resistance at the infiltrated concentration of 107CFU/ml. DNA was isolated from 10 chimera transgenic Hamlin and PCR test confirmed 9 of them are positive. They will soon ready for RT-PCR for gene expression. Several transgenic Carrizo with thionin increased canker resistance remarkably with infiltration test at the concentration 107CFU/ml. RNA was isolated from transgenic plants containing chimera and thionin. RT-PCR showed gene expression in the transgenic plants. Further gene expression level was evaluated with RT-qPCR. Our results showed gene expression variation between different transgenic lines, from several fold to 35 fold. Transgenic lines containing D4E1 were evaluated with Xcc infiltration. All the transgenic lines with canker development at 105 CFU/ml while some transgenic lines show less canker development at 104 CFU/ml. Bacterial growth rate in transgenic lines containing D4E1, chimera and thionin was investigated by qPCR. Our results showed some transgenic lines containing chimera and thionin had low Xcc growth rate. To explore broad spectrum resistance, a flagellin receptor gene FLS2 from tobacco was cloned into pBinARSplus vector (collaboration with Duan lab). Flagellins are frequently PAMPS (pathogenesis associated molecular patterns) in disease systems and CLas has a full flagellin gene despite having no flagella detected to date. The consensus FLS2 clone was obtained and used to transform Hamlin and Carrizo so that resistance transduction may be enhanced in citrus responding to HLB and other diseases. Many putative transformants were generated on the selective media. About ninety transgenic shoots were rooted with eighty Carrizo and ten Hamlin transformants planted in soil. DNA was isolated from 80 of them: 38 Carrizo and 7 Hamlin are positive by PCR test. Reactive Oxygen Species (ROS) assay showed typical ROS reaction in three of transgenic Hamlin which suggest nbFLS is functional in citrus PAMP-triggered immunity. However, there is only slight canker resistance by infiltration test. A series of transgenics scions produced in the last several years continue to move forward in the testing pipeline. Several D35S::D4E1 sweet oranges show initial growth in the field which exceeds that of controls. A large number of ubiquitin::D4E1 and WDV::D4E1 plants and smaller numbers with other AMPs are replicated and in early stages of testing.



A secure site for testing transgenic and conventional citrus for HLB and psyllid resistance

Report Date: 07/15/2014   Project: 220   Year: 2014

A secure site for testing transgenic and conventional citrus for HLB and psyllid resistance

Report Date: 07/15/2014
Project: 220   Year: 2014
Category: Horticultural & Management
Author: Ed Stover
Sponsor: Citrus Research and Development Foundation

A transgenic test site at the USDA/ARS USHRL Picos Farm in Ft. Pierce supports HLB/ACP/Citrus Canker resistance screening for the citrus research community. There are numerous experiments in place at this site where HLB, ACP, and citrus canker are widespread. The first trees have been in place for over three years. Dr. Jude Grosser of UF has provided ~600 transgenic citrus plants expressing genes expected to provide HLB/canker resistance, which have been planted in the test site. Dr. Grosser planted an additional group of trees including preinoculated trees of sweet orange on a complex tetraploid rootstock that appeared to confer HLB resistance in an earlier test. Dr. Kim Bowman has planted several hundred rootstock genotypes, and Ed Stover 50 sweet oranges (400 trees due to replication) transformed with the antimicrobial peptide D4E1. Texas A&M Anti-ACP transgenics produced by Erik Mirkov and expressing the snow-drop Lectin (to suppress ACP) have been planted along with 150 sweet orange transgenics from USDA expressing the garlic lectin. More than 120 citranges, from a well-characterized mapping population, and other trifoliate hybrids (+ sweet orange standards) have been planted in a replicated trial in collaboration with Fred Gmitter of UF and Mikeal Roose of UCRiverside. Plants are being monitored for CLas development and HLB symptoms. Data from this trial should provide information on markers and perhaps genes associated with HLB resistance, for use in transgenic and conventional breeding. Dr. Roose has completed initial genotyping on a sample of the test material using a “genotyping by sequencing” approach. So far, the 1/8th poncirus hybrid nicknamed Gnarlyglo is growing extraordinarily well. It is being used aggressively as a parent in conventional breeding. In a project led by Richard Lee, an array of seedlings from the Germplasm Repository are in place, with half preinoculated with Liberibacter. Additional plantings are welcome from the research community.



Development of Promising New Scions for Florida Citrus: Exploiting HLB Resistance and Tolerance

Report Date: 07/14/2014   Project: 605   Year: 2014

Development of Promising New Scions for Florida Citrus: Exploiting HLB Resistance and Tolerance

Report Date: 07/14/2014
Project: 605   Year: 2014
Category: Plant Improvement
Author: Ed Stover
Sponsor: Citrus Research and Development Foundation

Evaluation of released cultivars (‘Hamlin’, ‘Temple’, ‘Fallglo’, ‘Sugar Belle’, ‘Tango’, and ‘Ruby Red’) for HLB resistance/tolerance is progressing on time. In August 2010, the plants were established at Pico’s farm in Ft. Pierce Fl. Data on the growth rate, disease severity, and Candidatus Liberibacter asiaticus (CLas) titer levels have been collected since April 2012 and will continue for another 9 months. All trees exhibited symptoms of HLB and tested positive for CLas. During the 27-month period, there were significant differences in disease severity, stem diameter, and CLas levels among the varieties. ‘Fallglo’ had the lowest incidence of HLB symptoms, whereas ‘Ruby Red’ had the highest. ‘Ruby Red’ also appears to be in significant decline. The highest CLas titer levels were observed in November, December, and January with ‘Sugar Belle’ and ‘Tango’ had the highest titer levels while ‘Fallglo’ and ‘Temple’ had the lowest. Despite the high titer levels found in ‘SugarBelle’, it had the greatest overall increase in diameter and was the healthiest in overall appearance. These results indicate that compared to ‘Hamlin’, ‘Fallglo’ and ‘Temple’ appear to display field resistance to HLB while ‘SugarBelle’ appears to have significant tolerance. Imidacloprid was applied quarterly to a subset of trees and significantly increased stem diameter compared to the non-treated trees but did not have a significant effect on tree height, disease severity, or CLas titer levels. Progress has been made on the antibiotic treatment of HLB infected bud-wood. Bud-wood was treated for nine varieties, 3 HLB-resistant (‘Temple’, GnarlyGlo’, and ‘Nova’) 3 HLB-tolerant (‘Jackson’, FF-5-51-2, and Ftp 6-17-48), and 3 HLB-susceptible (‘Flame’, ‘Valencia’, and ‘Murcott’). In November 2013 and May 2014, HLB positive bud-wood was treated with various concentrations of penicillin and streptomycin and grafted on sour orange rootstock. As the scions emerge, standard growth measurements (stem diameter and height), disease severity, and CLas colonization will be evaluated/determined on a quarterly basis. A total of 216 plants out of 320, approximately 60%, were successfully treated and grafted. Development of chimeras is currently underway. One hundred and fifty etiolated seedlings of the trifoliate ‘Rubidoux’ and the sweet orange ‘Hamlin’ has been approach grafted together. After approximately 6 weeks, a horizontal cut will be made through the graft union and treated with plant growth regulators to promote formation of chimeral plants. Generation of new chimeras has been difficult. No chimeras have been produced at this time. To increase the success rate, additional plants will be grafted over the next twelve months. In October 2013, 34 unique genotypes (USDA generated hybrids), some of which appear to have tolerance to HLB, as well as 16 standard and non-standard commercial varieties were exposed to an ACP no-choice feeding trial. Approximately one month after exposure, the trees were transferred to a field plot at Pico’s farm in Ft. Pierce Fl. Growth measurements (stem diameter and height) and disease ratings were initiated in July 2014 and will continue on a monthly basis. At each evaluation period, three leaves will be randomly sampled and CLas titer levels will be quantified using qPCR.